FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_019.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_019.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGCTCTCTCACCTTCGGAGGTAAATTTGAAGTTAAAATGTAGCTGTA23.225806451612903No Hit
ATGGTAATGCAATGCTTGTTTTGTTCTTGGTTACTAATGTTTGTGTTTGG23.225806451612903No Hit
CGAATTTGGAACCCTAGGTTTAATTCAGGTTTTAAAAAGAGTTTACGCAT11.6129032258064515No Hit
ACAAAATACAAGTCTACACACGGATTATACAAATTCTCCTGAATCCTGAT11.6129032258064515No Hit
CCCAAGCACGCTTAGCTGCGGAGTTCTGATGGTATCCGGTGCATTAGTGC11.6129032258064515No Hit
GGCTTATAAGATTCGGTTGCGGTTTAAGTTCTTATACTCAATCATACCTG11.6129032258064515No Hit
GTTTCCCATGCTAGGGAATTCTTGAACACGGTACATTTTTTTCTCTAGTG11.6129032258064515No Hit
AAATAGATCCCATAACAAATACATGTGCGTCATGCATGCGTAATCATTGA11.6129032258064515No Hit
CCAAAGAAGTGACATATTTGCCCACATTCTCATTTGGCATTTGCAAGTAA11.6129032258064515No Hit
GAGTATAAGAACTTAAACCGCAATCTTATCCTAAAAGACTAAGTAGTGTT11.6129032258064515No Hit
CTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATAAATTCG11.6129032258064515No Hit
CTCCCATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCCATTACC11.6129032258064515No Hit
GGGGATGGGTCTTTTGTCGAAATAGAGTGGAGTGACCTTCTTTTTTATTT11.6129032258064515No Hit
ACATTAGGTCTGCATTGTCTCATAAGTTCTTCACATTGTTTCTGAATGAT11.6129032258064515No Hit
ACGTAGAGAAATACCTAGGTTACTCAAATCGTGCGCAAACAGGAGGTCAG11.6129032258064515No Hit
ATTGAGAATTGTATCTGTGGCTACTGCTGTTTTACCGGTCTGTCTGTCAC11.6129032258064515No Hit
CCATGGTCCCTTAAGTAATATGTGTAAATCGATAGATTTGTGGGGTATGT11.6129032258064515No Hit
ATATATATATATATATATATATATTTGTTCTAGACTCCAATCAAATGACG11.6129032258064515No Hit
CTCTATAGCTCAAGGGAAACAATGTCACGTCAAGATCTAGATAATTATTC11.6129032258064515No Hit
ATTGCAGTCTCAACAACACAGCAACAACAATCAATCGCAGTCTCAGCAAC11.6129032258064515No Hit
AATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGT11.6129032258064515No Hit
GTTATGGTTTTGTTTTACTTTGTTTCAGAGAGTAGACTTTTGGATATTGC11.6129032258064515No Hit
CCTGCTTTATCTCAGGATATATGGCGTGAAGACGGTGTTCAGCTGCTTGG11.6129032258064515No Hit
GCATCACAACTTGCTCCTTCTTTCGAACAAGCAAAATACGGCTAAAACCA11.6129032258064515No Hit
ATATTGTAGGGTGGATCTCGAAAGATATGAAAGATCTCCCTCCAAACCGT11.6129032258064515No Hit
GCTCTAACCAGGTCATAATCTACGATGTCGACCAAGCCGGATTTGTCTTT11.6129032258064515No Hit
CCTTAGAGAAGTGAAGATACCAACTGGAAGAGATTTAGTGAAGATGTCGG11.6129032258064515No Hit
TCTCCCTACTTCTGAGATGGTAGAATCATGCTCGGTAGCTGGACGTGGGT11.6129032258064515No Hit
GGATAGTAGAGATCTTCCTGCATATGAGAATCATTACATTCATTTAATAT11.6129032258064515No Hit
CATGTGTATGATTGAGTATAACAACTTAAACCGCAACCCGATCTTAAAAG11.6129032258064515No Hit
TAACCAAATATTGCAATGAATTTTCAAGCAAAATATTGTGAGTTAGATAG11.6129032258064515No Hit
TAGTTATTACTTTGCAAAAAGACTCTCTTTCTCTAGGCAGGAACGCAATA11.6129032258064515No Hit
AGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAG11.6129032258064515No Hit
TTTGTTATCTGGGAAGATTCCGGCGTCAACTTCCGAAGCTTGAGAATTTC11.6129032258064515No Hit
GAGTTGAATAACTCGACTGCAAAAAAAAAAACAAAGAAAACGAGGAAGAT11.6129032258064515No Hit
CTAATGAATGATCTAATGAAATTATGTCATTGCATCAATTAATGGTAGAA11.6129032258064515No Hit
ATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACCTTT11.6129032258064515No Hit
GAAGCAAGGCCGCCATTGATCAAGATGAGTGTCTTCAATGGCTTGATTCT11.6129032258064515No Hit
TATATATATAAGGCATCCTCCGGATAATTCAAATCTAAGCAATTAGATGT11.6129032258064515No Hit
AATATCGGTATTAAATCCGAAACTCCCGGCGGATGGCCAGTGACCCAAGT11.6129032258064515No Hit
GATAACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGC11.6129032258064515No Hit
GGGTCAGTCAAATCATCTGCAGGTACATAAACTGCTTGAATAGAGGTTAT11.6129032258064515No Hit
GTTCTTTAGTTAGTACGAGTGAGTATATTGATTTTAAGACAACACTTACA11.6129032258064515No Hit
ATAGAGAACCTTTTCTTCTGTATCGATATGAATCCATTATGAATCGATAT11.6129032258064515No Hit
CTTTGATGGTTTCTTTTTTTTTTTTGTAGTGCTAAAGGCTGTCATGCTGT11.6129032258064515No Hit
GCAAATGCAATATCTTAAACTAGAAACTTAACAAAATTTACATAGAAAAT11.6129032258064515No Hit
ACCCAATAGTTTTTGATTGGAATAAAAATACCTCAACTAAATATATGTAA11.6129032258064515No Hit
GCCACAAATAGGCCTCGGTGTTCGGATACCCGTTTGGGTTCGGATCAGGT11.6129032258064515No Hit
ATATATGATTGGTCGGGGGTATATGGATAAGAATATAAATATTCATTTCC11.6129032258064515No Hit
GCCAAAGTCCATATGAGTCTTGGGCTTTGTGTCTTCTAACAAGGATACAC11.6129032258064515No Hit
GTTCTCTACTTAGCTTTCCCAATGGTCATTAGAATTCGGTAAAATTAAAG11.6129032258064515No Hit
GTTCTGCTTTCAGCCACAGAAGCATCTGAGATGATATTGCGAGTGGATGA11.6129032258064515No Hit
CCTATCAAGCAGATCTGCTATACAGCACTCGAAAATTAACGGATCCACAT11.6129032258064515No Hit
TTCTTTAACAATCTCAAACCCTTTACTAGACTTTTTCTAACTTCTTTAGC11.6129032258064515No Hit
ACTTATGAGTGGAGGGCTTCGCTTTTTTCTATAACTGTCACTGGAACAGA11.6129032258064515No Hit
AGCGTAGAGAAGCTGGTTCCATGAATCAGGAACTCCAGGTAAGCACCAAT11.6129032258064515No Hit
CTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATT11.6129032258064515No Hit
CTTTTAATAAGGATACAATTCTTACGCCTCTAAGATCCGGTTGCGGTTTA11.6129032258064515No Hit
CCTCTTTATATGTTAATCAATCAAAATAATTATCTCATTTAGAATAATTC11.6129032258064515No Hit
ACAAACACACTAAGAAACTCAACACAAAATTCTGCCTGTGAAGCAAAAAG11.6129032258064515No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)