FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_013.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_013.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATAAAAATATAAATAAAAAAAAAAGGCTACATTACGGAACTTAATAAA10.6896551724137931No Hit
ATTTTATTATTAGAATTAAGAGATAAATGAAAAAGATTCGTGGGACGGCG10.6896551724137931No Hit
GGATATGCTGGGATCGGTGAAATAGCCCAGACAAGTCTAGCGAAGCTACA10.6896551724137931No Hit
AATTTTATCCTCTTTTCCCTAAATTAAAGAACCTAATTAGATTCAAGTTC10.6896551724137931No Hit
ACCATATCATATACGAGATACCTCCTCCTTGCCTCCCCTTGCTCACCTGT10.6896551724137931No Hit
CTTGAATTGAAACCACTGAAAGAAGAATTGAATTCATCATGATGAACAAT10.6896551724137931No Hit
CCCCCAAGCTTAACGCTTTAGTCAGACCTATCAAAGAATACACTTGAGCA10.6896551724137931No Hit
CGTAAAACTCACTAGGGTAAGCGGTATTATTAAACCAGACAAAACAACAA10.6896551724137931No Hit
ATCCAGAACAAACTCTCCCATATAATCAACCATATCGATTTCGCGCGAAT10.6896551724137931No Hit
CTTGGGCTCAAGGTGACTATTGTTGCAAAGGTCTGATCCTGAACCGCTTG10.6896551724137931No Hit
TAGTAATAGAGATGAGATCTCAATCTCACCACCAAAAGAAGAAGTTGTTG10.6896551724137931No Hit
ATATAAAACAAGATAAAAGACACAAACCCAAACACAAATATGGAATAACT10.6896551724137931No Hit
GATATAATAGATATATATCTAAATTCAAATAAAAAAGAAGGTCACTCCAC10.6896551724137931No Hit
ATTTGTATCTATATGCAATAGGATCCCGATTTATGGATCTCACGGTTTGA10.6896551724137931No Hit
TTCTAGTAGTGAAGCTCTTATGCAAATGGATTCCGCACAGAATCAGTTCA10.6896551724137931No Hit
ATCAGACTCTTGTCACAGCGGCGGGCTCATTGATGAAGCTAAGGAACAGA10.6896551724137931No Hit
CAAATAGAAGGCCCAAATCCAGAGAGTTTATCTAATTCGTTAGTACCTGG10.6896551724137931No Hit
ACTTAACCAGGACAAGGAGTCTATGTAAACCTTTCAGAAAATTCAAAACT10.6896551724137931No Hit
GACACAAGGCTACTAAACATACATGATAGACAAGATGTAGGAGCAATTCA10.6896551724137931No Hit
ATTGTTTAGTGTTTAAGATTATATACTTGTAGTTTGATTGTTAATTTAAG10.6896551724137931No Hit
GAGCTATAGAGCAACATAGGAAATTTCGTAAGCTTTTTAGCAAACAAGAT10.6896551724137931No Hit
GTGTCCAGATAGTCCAAAGTCTCGATAGTTAGCTCTCGGTCTTCCGGTCG10.6896551724137931No Hit
GTTACTCACGCACGAAGCAGTGAAACAGAGATACTGTGAAAAAGTGTGTT10.6896551724137931No Hit
ACATATGAAGATCTTTTATCCACACCGAAAACATACTGAGATTCCCGAAC10.6896551724137931No Hit
GTTGTATGGTTACCACATCGCGAGATGTGTAGGCATATCATATTGGCAAG10.6896551724137931No Hit
GATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCG10.6896551724137931No Hit
TCGCTGTAGAGGATAACTCCACAGACAGTGAGCGAGTAACCTAACATTCC10.6896551724137931No Hit
TAGTAGACCATGTGGCTTGTGTAGTGAATGCAAATCATACTTCTCAGGAA10.6896551724137931No Hit
AGGGATAACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTT10.6896551724137931No Hit
TATTTCGACTTGAGATCAATCCATAAAGACCAATAAAAAATAAATAGGCA10.6896551724137931No Hit
AAACTTATATCCGCATCTATACATACGAAAACTACAATGTTAATAAGCCG10.6896551724137931No Hit
GCTAGAGACTCTAACCTCGAATTTGTTAATAGAAAAAAGATGATAAGATT10.6896551724137931No Hit
GCTTGTAGATCTTATGCAATTGTTCAATCTGCCAAAACCAAATACAAAAA10.6896551724137931No Hit
GTCCTATGCTCGACCTGGGGGTCGAGTGGTCTCTTGGGATCTTGAAGCTC10.6896551724137931No Hit
ATATTAACTATTTCTTTATTTTCCGATCGCCTGGAAGGGACAAAAGAAAC10.6896551724137931No Hit
GACTATACACATTGGGAAATGTATGCGATCGGTGGCAGTGCGAGTCCTAC10.6896551724137931No Hit
GAAATACATGAAGAGTTTAGAAAAACATTTATTTTGTATTTAAGCTATAA10.6896551724137931No Hit
CTCTTCCATCGTTTTGATAGAGCCATAGTTCTCACAGCTTCGTTTAAAGG10.6896551724137931No Hit
ATCTTAACCATAGTGTTGGCTGGAAATTTGCACTCTGTTCAATGGAGAAT10.6896551724137931No Hit
CATTTGCACATATATTGCTAATAATCCACGGCGGAATATATTCACCTTTA10.6896551724137931No Hit
GGACCCGTGAGCAAACCTAAGGCCGACGGAGGAAGGATTTCATGGGCTAG10.6896551724137931No Hit
CCTTTAAACGTTGGTCTAGTCCGCTCTTACTACCGCTGGTATCTTTGTTG10.6896551724137931No Hit
TTTAAATAGTATCTAACACTTCACAAAAAATATCTAGGAGATGTGAGGAT10.6896551724137931No Hit
TGTTAGGTGAGCATATAATCGTATCGAGAAAACAATAGTACATAATTGTC10.6896551724137931No Hit
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGG10.6896551724137931No Hit
AATCATCTCTGTTTGTTAATGTAACCATGTTGGATTTTGTTGGTTTCCTA10.6896551724137931No Hit
GCATAAAGGAGACGTTAGAAGCTTGGCCATTTACGGAGTGTCTGTAAGAG10.6896551724137931No Hit
GTCATATCCTGAAGAGCTTCCCATACAAACACCAAGAAACCCCTCATTTA10.6896551724137931No Hit
ATTTTTAGAGTTACTATTGAAATTTTGTTTTACTTTTATATGTAAACTAA10.6896551724137931No Hit
GTGGGTAAGTTTTGAAATATAAATATATCGTAAATGCTGTGTTCTGTTAC10.6896551724137931No Hit
CATTTTAATGTCTATATGAATTTATTTTATTTTATATGAAACCCCAAATA10.6896551724137931No Hit
GAGATAATGATGAATCAAATGAAGAAAAGGCTACTTCATCAAGAATCAAA10.6896551724137931No Hit
AGCCGACTGTTTTGTAACACAAATGTAAGTCTTGCTCGTATCTTACAGAA10.6896551724137931No Hit
GATTAAAAACGGTACTTGACCCAGGTGGTCGAGTGAGTGGTGGAGTGATA10.6896551724137931No Hit
ATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAAAAATACGAATCGG10.6896551724137931No Hit
ACTATATACTTCGTGTTACAAATTTTCTTTTCAAAATATCATAAAATAAA10.6896551724137931No Hit
CATCAAAGTCCAACTAGCCACGAAAACACAAATTTTGATCTAGCCTAGAA10.6896551724137931No Hit
GTAGGATTCAGTATAAGAACTTAAACCGCAACAGGAACTTAAAAGCCTAA10.6896551724137931No Hit
ATCTGAGTTTATAATTGTTCACAATCCCACTTTTTTGCTTTGCTTATTCT10.6896551724137931No Hit
GACTGAGAGAGCAGAGGGAGGAGGATTTTGCCAGATTGCAAAAATCTCAC10.6896551724137931No Hit
CTAGACCATTTGGTAAACGAAGTTTGTCCATAATAACTTTGGCCTCTTTC10.6896551724137931No Hit
CTATCACATAGCTACAATTATGCTAAACCTAATGCACAACATTCAGACCA10.6896551724137931No Hit
CGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATAGG10.6896551724137931No Hit
AGTTTCCTGTTTCGGGTTTTAGAAAACGAGGTCGGGCAAGAACTGAATCA10.6896551724137931No Hit
TGCTTAAGCAGATTACTTAATCCTACGGCTATGGATAATTAGTTGTTAAT10.6896551724137931No Hit
CCCAGAACCTAATACTCCTAACTCATTCTCCTAAAAGTCTCTTAGCTTTT10.6896551724137931No Hit
TATAGATTCCAATGATGATCATAATAGACCGTGGTGATGTATAAAACCAT10.6896551724137931No Hit
GTATGGGCCCTCTGACTTCCAGCTATGTGCTTGTGCGGCTCCCGCGAAGC10.6896551724137931No Hit
GTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACC10.6896551724137931No Hit
GTGTATAGACATCTTGTACATCAGGGACAATGAGCATCAATGGCTGCACA10.6896551724137931No Hit
CTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAAT10.6896551724137931No Hit
GTGATACGCGTACGAGGAGTCGACGGGGAAGAGCCGTGCTGGGGTTGGAA10.6896551724137931No Hit
TTCCATCTCTCCCTGGAACTTAGAGTAACGTGCTGCCTCCATATCCTGGA10.6896551724137931No Hit
GTTTTTGGATATCAAACGGACCTCTCCAGAAGGTAATTTTAATGTGGCCG10.6896551724137931No Hit
GGTTCGAGTCCCGATTGAAGAAATTGGTGCCACAATTCAAGGGCCAAATC10.6896551724137931No Hit
GTAACCTTTAGCAGCATCATAACCAAGGTCAGGATTATCTTGTTCCAAAA10.6896551724137931No Hit
GAACCAACTATGTAGCATCTACATCGAGAATTCAAGTCTTTCTTGTATAC10.6896551724137931No Hit
TCTAATCTCTTTCTTCCCCCAAATTCACTTTCTGCATTTTTTTTCTATCT10.6896551724137931No Hit
GTGTTCTGTTCTTATTTTCTTTCTATAGAGTAAGAACAAGAAGCTGCTGA10.6896551724137931No Hit
ACTGGAGCAGATAAGATATATCACCATATAAGACAGAACAAGGTGAAAAC10.6896551724137931No Hit
CATTATAAGGAGAGACAGCTAAGATGAAAAATGACAACTTGAGCTCGAAA10.6896551724137931No Hit
ATTTGAGGTTTGGTATCGACAATGGTCCTCGAAATTGATAACACGGCTTT10.6896551724137931No Hit
CCCTTGCCTGCATTTTTAACTATGGAATAATTGTGTTACACTATTACTTC10.6896551724137931No Hit
CAAAAAATAACACCAGATCAAATAAAAATAATTTAAAATTCAAACAGAAT10.6896551724137931No Hit
GCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACA10.6896551724137931No Hit
GTCAACAACATCATATTTTAAGAACAAAGTGTTATATGTAAAAGAAGCAG10.6896551724137931No Hit
AGCTATGTGTACCATTACCGAAGTATAATCTACTGAAGTATCAGTATCAT10.6896551724137931No Hit
GTAGTAGGATTTGTTCTCATAATAAAAAAAATATGTTAAATTTTGTTACG10.6896551724137931No Hit
CTATCATTGCCGTGGGCGACGCGGCTGAAGATCGCAGTCGCAGCTGCTAA10.6896551724137931No Hit
ACCCTCACGCATGAATGTAGGACAGATATTTGAATGCTCGCTTGGGTTAG10.6896551724137931No Hit
TCTATATCCTCAAACAAAGAACAAAACTTTGCTTCAGAAGCACATTTCGA10.6896551724137931No Hit
AGGACGCTCCCAAAATAGATCAAATCATTTTGGTACCAAAATAAGATTAT10.6896551724137931No Hit
CTTTATAAATTGTCGAATGTAATCGCAAGTATATTAACCTTTTTGTTAAA10.6896551724137931No Hit
GTATATAAGACATTACAAGCTTCACATAGTTGCAAAAAAAGAACACATGA10.6896551724137931No Hit
GTTTATCATAAAGAGATTCGTTGTTCCTGACCCTGCTTCACCTTAATTGT10.6896551724137931No Hit
GTCATCCTCTTTGATTACTTAACTTAAGTGTCTTGTTAACTCTTGTTTCA10.6896551724137931No Hit
ATGTTAGAAATCAGTAAAAACCAGGACATATCAACTCCCCAGACTTAGCT10.6896551724137931No Hit
TCATTAGATATACGAACCAATAGTTTCCTGAGAATACCTTAAACCTAACT10.6896551724137931No Hit
GAATAAATAACATTACTGAGGTCACATGTTTTCTCTGGGTACATGAGAGC10.6896551724137931No Hit
ACTCTTAAGTTTAAATTTAATAAAACCAACTCTACTGGAATCTTAACTTA10.6896551724137931No Hit
ATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACTTCCAGTTATCTTG10.6896551724137931No Hit
AATCTGTACAAAGGGAAAGACAGACGAATGAGATATTAGGGAAACACATG10.6896551724137931No Hit
CTTAAAAGCCTAACTAGTGTTTCCTTGTTAGAAGAAACAAAGCCAAAGAC10.6896551724137931No Hit
AAATTAAACCGCAACCCGATCTTAAAGGCGTAAGAATTGTATCTTTGTTA10.6896551724137931No Hit
CTTTAAATTACAACATGTACTTTCGGATTCATCCTTAAACATACATTTCC10.6896551724137931No Hit
TTGACAAGCAAGAAGAAGGTTGTTTAGTGTTTTGGAGTTGAATATGACTT10.6896551724137931No Hit
GTATTCCATTGCCCCTCGTTCCTGTAAACTGGTCACTACCTGAGCCACGG10.6896551724137931No Hit
TTATAGACATAGTTACGGAATTTATGTATAGTTCAGGCAAAAATTAGATA10.6896551724137931No Hit
ATCATATTACGATTTTAAGTTACATGTAATTAAAACAATATACCATAATC10.6896551724137931No Hit
TTCGTGAACGACTCATCAACCTATGAGAGCTCAAAAACTGCTTCGCTCTT10.6896551724137931No Hit
GGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCA10.6896551724137931No Hit
CACTTCCACTGTAGTGTCCGAGTAGATACTTTGACTTTCTCTCGAACCAT10.6896551724137931No Hit
AGACTATATATATTAGAAAGAGTACCATGTTGCATCTGAACTTCAAACGT10.6896551724137931No Hit
AGGCCAACAAAGTGATAGAGCATGTTAGCTAGGAATTCATACTTGTTGTG10.6896551724137931No Hit
ATTTACTGGAGAGTCCTTGTGTTCTAGTTTAAGGTATGAATCCAATGCAA10.6896551724137931No Hit
CGAGTATCCAGGAAAAAGCCGCATTTTTGATGGAAGAACAGGAGATCCTT10.6896551724137931No Hit
ATTCATTACATTATTTTCAACCAAAAAAACTAAACTCTAATATAACTCAA10.6896551724137931No Hit
AGGATATGATACCCAATGCAGAGTTATAATGTTTTTTACTAGCTGATAGC10.6896551724137931No Hit
GTATAAGAACTTAAACCGCAACCCGATCTTATAAGCCTAAGTAGTGTATC10.6896551724137931No Hit
ATAAAAAGCCCTAATTTTAAGAAAAAGTTTTTTGCCTCTAACCTCTGACC10.6896551724137931No Hit
TCTCTTGTGTGATAAATTTCACATATGTCTCATTCGCCACAGCAAATTCA10.6896551724137931No Hit
ATTATATACACATAGGTGTAACCTAGATTCTTAAATTACACTTCCGCATA10.6896551724137931No Hit
CACTTATACAACTTAGAGTCATTCATCCATATTTAATACATTGATTGATC10.6896551724137931No Hit
ACATTAAATCACTTATTGACTATGAGTCTAAAATATAGTTAAATAACATG10.6896551724137931No Hit
GAAACAGAGGAACCCTAAATCAGCATTCGAGTAAGCAATGTTGGGGAAAT10.6896551724137931No Hit
TCATTGAGCTTGATGAAGAGCCTAGACATCCACTCATCCTTGGTAGACCA10.6896551724137931No Hit
TTGTAAATTTNCTCCATTATGTGGTATCAATAAAATGAAGGAAATCATGA10.6896551724137931No Hit
CGAAACCGTTTCTAGGGTTTGTACTCCGGCCAGAGAAAATCGGCGGAGCT10.6896551724137931No Hit
CTCAACCTTGTCTGTACGATTACGTGATTTCTTCCTACTTAGTGGCCTGT10.6896551724137931No Hit
GAATCAACGATCTCCGAGAACGGGCGGAGAAGTTTTGTCGCTCCCAACGC10.6896551724137931No Hit
GTAGATTCATGTTCCAACAAACTTGGACAAATATGAGAGCCAATATGGTA10.6896551724137931No Hit
ATATGCAATAACTGAAAGAGTTTATATACCTTCTATGTGAAATATGGCTT10.6896551724137931No Hit
CACATATATGAACCAAACTCCAACATTTTGAGGCTTAAATCTTTATAGAG10.6896551724137931No Hit
ACCTTATTTCATATGCTTGCTGCTCCTCTTTACAAGGTAAATCGTCAAAA10.6896551724137931No Hit
CATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCC10.6896551724137931No Hit
CAATTCTAAAACTTAACCATTCTACAGACTACGGATTCCACAACTACTCT10.6896551724137931No Hit
GCTTTGTCGCTTCGGTGCATGTCCATGAATAGAAGATAGAGATAGAGATA10.6896551724137931No Hit
TCTTTCCGCTTCTAGTATCCTAGCTCAGCTAGAAAAACACATGGCTATGC10.6896551724137931No Hit
GTTATAGACATATTGGTGAAACATGCCTTTGAGAACGTGTCAAGGTTCAC10.6896551724137931No Hit
GAATTGTATCCTTGGTAAAAGACACAAAGCCAAAGACTCATATGGACTTT10.6896551724137931No Hit
ATATAGTAACTCGTATGAATAATAGTAAAGAGATATTCTGGAAATATATC10.6896551724137931No Hit
CGATATATCATGGCGAATTCTTCAGAAAAAATTGTGTCTTCCACAAAGGA10.6896551724137931No Hit
GCCAATATGTGTCGACCTTTGCTCTACGCCCGCCGAACTATACGTACCTT10.6896551724137931No Hit
CTCCTGCTTCAAGATCTTGGGATGAGGCTTCAGTTGCAGACATACCTTTG10.6896551724137931No Hit
GTTGAACCTTGGGATTGGTCGGCCGGTCCGCCGTTGGTGTGCATTGGTCG10.6896551724137931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)