FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_012.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_012.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTTTTATCAGTTAAAAGTAGTAATATTGGCTTATTGACAAAAAAAAAA17.142857142857142No Hit
GAAACTCATTTATAAAAAAAAAACAAGACTCAAGCTATGCACAAACAAAT17.142857142857142No Hit
GCACATCTTGCAGGCCCCCACCCCCGCCCCCACCCCAACCCAACTTAGCC17.142857142857142No Hit
CTCTTACTAATACTAACTGGAATCAAGGAATTAGTAGATCGGTTCCGCCC17.142857142857142No Hit
GAGCATTTTCTCGCTTGCCAAGTTCCTCCCTCAGCACGAGAATGTCTCAG17.142857142857142No Hit
TTCTAATACTTTGTATATAGCTTTTGTTTCTATATGAGATGTATCTCCTG17.142857142857142No Hit
GGAATTGGCTCTGTATCAATGGAATCTTCTCATCATCTATACATAACGAA17.142857142857142No Hit
CTCTTTCTCTCTTAGGGATTTTTCAAAATTCTCAATCGATTCCATCTTTC17.142857142857142No Hit
GGATAAAGTTCTATCCTTGCAACCTTGGGAACACTAGTGGAGACACATAG17.142857142857142No Hit
TTCATGCATTTACAATTCATGTGACGGTATTGATACTGTTGAAAGGTGTT17.142857142857142No Hit
TCTCTGTACGGAAGATTGTTTCATTCATATTATTGATTTGTTTACAGGTT17.142857142857142No Hit
ACCTCGTACTTGTGAGTCACCCAGATTGAAAAATCATTTCTTTGATTCAG17.142857142857142No Hit
GGGGCAGCGGGTGGCGGCGCATGTCACGTACGGTCGCGGCCAGTTGACGC17.142857142857142No Hit
AAAATAAGCAAGAACCCCTTGAATCTGATCTTTTGTTAGAGTTTTTGCCA17.142857142857142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)