FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_011.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_011.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTCGACTCCAAAACACTAACCAACCTTCTTTTTGCTTCTCAAAGCTT42.3529411764705883No Hit
GAGTATAGGACAAAGTTAATCACGCTATTTTATATTCGTTAATAAAGTTG31.7647058823529411No Hit
TGCTCAGGGGTAATCATGAGCCCACTGGATGAACCTTGAACAGCTGGTGA31.7647058823529411No Hit
ATCATTTTCTTTTGACAACTTGATTGCTGTCTCGTGAGCTTCAGCTTCTC21.1764705882352942No Hit
CCTTTGATTGCCTCCCTTGTTTCAAAAGCTGCTCAAGCTTGTTTCTTCCT21.1764705882352942No Hit
TCCCAATGGTGTGTTTTCTACAAATACAAAAGGTAATGTCAGTAAAAAAA21.1764705882352942No Hit
GAATCATAGATAAACAAGAACATTATTAAGCACGGTGGCAACAACAAAAG21.1764705882352942No Hit
GGAGTACAGTTCTTCCCAGAGCCACAGCACCCCCTGCCCATGACCTGTCT21.1764705882352942No Hit
GTTTTCCTCTGCCTCTGCCAAGTTTCATCATCCGCGTTGAATATTCCGCC21.1764705882352942No Hit
GGGATAAGGTGGAGTTGCCGGAGAGAGGAGACTGAGTATGCAGTCAAAAG21.1764705882352942No Hit
GAATCTCGATTGGTTTGAGAGCAAAAGAAATGAAGAGAGCTCACAAATTT21.1764705882352942No Hit
AATTTTGCCCGCACGCGCGCGCGCGAATAAGAATAAGAATAAGTAATAAG21.1764705882352942No Hit
CCAATTGACATCGCTCTTTGAAGCATTTTCGAGAATTTCGTGGACTTGTT21.1764705882352942No Hit
CTTATACTCAATCATACACATGACTTCAAGTCATATTTGACTCCAAAACA21.1764705882352942No Hit
GGTTATGATTCCCCATCAATAATTAAGTATCTCAATCTATCTATAGGAGA21.1764705882352942No Hit
CCTCTAAACTTCAGAACATCCGTATTGCAGTTAAAGAACAGTTCGCTGCA21.1764705882352942No Hit
CTCCATAACAATACTGTAGGTCACTTTGTCAGGTTGAAACCCGGCATTTT21.1764705882352942No Hit
AGATTGCAGCCTAGTGATTGCTTTGGCAGCGAGCTTGTATGATTGTAAGG21.1764705882352942No Hit
ACACTGCTCCACTCGCATTGGATCATATGAATCCTCAGAATTCGGAGTCT21.1764705882352942No Hit
CCTTTACTCAGTCAAGACATGCATATGTTCGCTAACCATTCTAAGCCAAA21.1764705882352942No Hit
ACTTTATTGTACCGCAATTGGCGCATTGGTCTTCGCAGCCTTAATGCTTT21.1764705882352942No Hit
CCAACCTTCTTCTTGCTTCTCTAAGCTTTCATGGTGTAGCCAAAGTCCAT21.1764705882352942No Hit
CCCTCATTCCTATTGTATCATGGACTCTGGTGGTTGCTCAGACCATCTTC21.1764705882352942No Hit
ATACTTGGCATTCAGGTATCGACTTCAAAAGAAACTTGTTTAAAATTGCC21.1764705882352942No Hit
ACGTTAGGGAGGTAGTTAACACTTTTCACCGTGGCAAACTCTGGAGGCTT21.1764705882352942No Hit
GATAATCCATTTCCGAGAAGACAAGCCGATGAAGCAGCCATCTGCACAGA21.1764705882352942No Hit
ATAGCCGCGAGTGAAGTACATCGGAGCTGTTGTGATCTTAGATCTTGGTT21.1764705882352942No Hit
GTGTTTTGGAGTCGAATACGACTTGATCTCATGTGTATGATTGAGTATAA10.5882352941176471No Hit
GCTTTGTGTCTTTTAACAAGGATACAATTCTTACGCCTTTAAGATCCGGT10.5882352941176471No Hit
CCATAGTACGGTAGGCAGGAGGCAATCATTGCCGTTGTCAGAGCTTCTGT10.5882352941176471No Hit
ACACTGCTCCACTCGCATTGGATAATATGAATCCGCAGAATTCGGAGTCT10.5882352941176471No Hit
TTTTCACACTTCATGGGATTTTGGAGACATTCTAGGATCGACCAAGCATG10.5882352941176471No Hit
GGCTTTACCCGATAGAACTCGCGTCCGAGCTCCAGCTATCCTGAGGGAAA10.5882352941176471No Hit
TGTTTGAGTAATAGCAATGAGATTCCCCAATATCATGCTAAGAATAGCTA10.5882352941176471No Hit
GGCTTCCGCCATTGCTAGCCAAACCAATTCATAACTATACAGTCTTTGTG10.5882352941176471No Hit
GAATAATATTGCCCAAAACAAACCAAATAATAATCCTAACGTTCGAGTCA10.5882352941176471No Hit
GTACACGGCATGAATGTGAATGGTGACGGCAATGACTTCTTTGTGCGCTC10.5882352941176471No Hit
GGTTGGTTAGTGTTTTGGGGTCGAATATGACTTGATGTCATGTGTATGAT10.5882352941176471No Hit
GCATCATGAGAGCTGCATCAGCCGGAGTAGCCACTCCACCGGCGGCGAAT10.5882352941176471No Hit
CAAAGAAGGGGATAATCCAAAAAGGGAAAAAAACCCAGAAACAGAGCAAC10.5882352941176471No Hit
GTAGTAAAAAAAGACGCGGTATTTGGTTCATTTGTCCTATATGTGCAAAT10.5882352941176471No Hit
CACAATCATTATCATCACATAATTCTTCTCCTTATCTTTTTAAGCAAAAA10.5882352941176471No Hit
CGTTCATGCCCTTTACTGGTCTTTTTTAAAGAACGGCCTGAATTNTCAAG10.5882352941176471No Hit
GTAAATTATAAAAATAACAAAAAAAATAAAACAAAAAAAAAAATACAAAA10.5882352941176471No Hit
TGATAACAGTGATCCATTCGCAAGATCATTGAGGGAAAATAGCCTGAACC10.5882352941176471No Hit
ACAAATAACACTAAAATCATATATTTATTTTTGTTATATATGTGCAGTTT10.5882352941176471No Hit
CCTTCAGCTACATGGCTAACAATTTTTCTAAGAATGCCTGCAGGCATATG10.5882352941176471No Hit
ACCGTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTG10.5882352941176471No Hit
GGTTCTTTAGAAACTCTTTTTGTAAAGAATCGAAGTTTTTTATGATACTT10.5882352941176471No Hit
ACATCAAACACCTTAATACCTTAACATATAGCCAAAAACCCATCCAATGG10.5882352941176471No Hit
TTGAGCGAGTGCTACAAATTAATTAAAAACTGTGTCTAGTTTAACACTTA10.5882352941176471No Hit
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC10.5882352941176471No Hit
GTATTCATGAATATCCATCACGGATGACCAACATTTATTTATATCAAGTA10.5882352941176471No Hit
ACTTAGGCTTTTAAGATCGAGTTGCGGTTTAAATTCTTATACTCAATCAT10.5882352941176471No Hit
CTACTCTCTCTAGAGACTTGAAGGGGACTAGTTTTCCTATGATATATAGT10.5882352941176471No Hit
GATGTTGAGANGAGATGTGGTATGGGAAACTAATACGGTTGATGACTTGG10.5882352941176471No Hit
GTCCAGCGACCTTGTGATCGAGTGAAGCGATCGAGTGGATGTCATGAGGG10.5882352941176471No Hit
TCATCTATTGCCCGTTTGGGCTGAATATTAAAATAAATGTTTTTAAGAGT10.5882352941176471No Hit
AAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAA10.5882352941176471No Hit
AAATAATATTACACCTTTGGCCGATCTTAAGCCAATCCAGTCAGAATGTA10.5882352941176471No Hit
CGTATCCGCTGCGCCGCCGGCATCCGAAATGGAAGCCGTGCCGTTGTCCG10.5882352941176471No Hit
ATTTTGCACATGCATTTGAGTTTAAATGTACACATGATTTGTATGGTTTA10.5882352941176471No Hit
GAATGTAACTGAGTTTGATAAGATNGTTGCTGCTTGTGAAGCTAANGGTG10.5882352941176471No Hit
CTACGCTGGCGGTAGCGGTGCAGCCGGGTCCTCGGGCTCCATCGGTGGTG10.5882352941176471No Hit
ATACCTATCCAGAAGTTTTCGCAACTCAATCATGTATGATGGAATCATCA10.5882352941176471No Hit
GTATATATACGTGAAGAAGTTTGCGGAGGCAGATGTTGCGGAAACGAGAC10.5882352941176471No Hit
ATCAATGACGCAACCAGNTTATATCACAGCGTACTATATAACCCATTAAG10.5882352941176471No Hit
ACTTATACTCAATGCAGTTAATATGAAGTTCGTAACATTTTCTGATTTTT10.5882352941176471No Hit
GGTTTATCCAATCGCTTAGGTTACATTACAATTATTTTGGTTTGTGTTTA10.5882352941176471No Hit
AGAGGAAATGGATCCCGTATTGCTAGGATAATCAAGAAGATTAGGGAAGT10.5882352941176471No Hit
AGTTCAGAAGAATCAATCACTAATGCAAAAACAACACAAATACTTAAAAG10.5882352941176471No Hit
GGTTTTGAGATGTTTCTGGTGATTTTGTTTTAGCTAGGAGGTGACCGAGC10.5882352941176471No Hit
ACATTGAAATGTCTGAGGAGACACCGGTTCCAAAAAAAAATCAAATACTT10.5882352941176471No Hit
TCATGTCACCACCCCTGAAGGCAGCCGGGAACTCGTCTGTACCGCAGCGC10.5882352941176471No Hit
TGTTTGATATGTGCGGTTTAACAAGATACATGACCTACGCTTTCGAGAGT10.5882352941176471No Hit
CATAGGCTCCAAATGGATGACAAATAATTGAATATTTGGGTGCAAATGGT10.5882352941176471No Hit
GTTTTAGACCCTATCTCAAATCCGCTCCAACAATCATATCTCCGTCAAGA10.5882352941176471No Hit
CCTTATATGTAGTGCAACAATAATTCTATCTAATCCCTTCCTCTCTTTTT10.5882352941176471No Hit
ACTATATGTCTCTGGAACTTGTCCGTTGGTGCAGCTTCTTTGGTATAATA10.5882352941176471No Hit
GTGTTGAGCATCTTAGCAAAATGTTCAAGGTAAGGATTTAATATACAAAA10.5882352941176471No Hit
GCCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATATG10.5882352941176471No Hit
GTCTGTGACTGAGCCACGAAGTCTGCAACAACAGAGCTGTGCTGAAAATT10.5882352941176471No Hit
ATGGTAGATGTGCCACGAAGATATCTAAGAATCCGTTTGAGAAGACCAAA10.5882352941176471No Hit
GTCTCTTTGCTGCAGATGATGATTAGTTAAAATGTCTTGAAACATGGATG10.5882352941176471No Hit
ATTCCGAAAAGAGTGACAATTCTGTTTTCAACAATGGGGTTAATCATACA10.5882352941176471No Hit
GTAACTCTTGTTGGCTCTCCCTTGTCCCTTGCTTTGGTTTTCTTGGTAGA10.5882352941176471No Hit
GTTATAACAATTTAGATTTGTCGCCCCACATAAAAGAAAGTTTTGTGCAA10.5882352941176471No Hit
AAATAATGCAGGATTAGCTTCAAAACAATTAGAAAACTTTTTCAATTAAA10.5882352941176471No Hit
GTCATATTCGACTCCAAAACACTAACCAACCTTCTTCTTTCTTCTCAAAG10.5882352941176471No Hit
ACATCCACTTTAGGAGTGGGAAGCTCTATCTCCTCAATCTTCCCTTTCAA10.5882352941176471No Hit
GCTAGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAATTC10.5882352941176471No Hit
ACCTTCTTCTAGCTTCTCTAAGCTTTCATGGTGTAGCCAAAGTCTGTATG10.5882352941176471No Hit
CATTTCAACCACCCCAACAAGCCCCGACCACACCTTTTTTCACTCAGCGT10.5882352941176471No Hit
CACATACATCATCTACCAAGTATAGCTCATTCATGCTCCCAACGACATGT10.5882352941176471No Hit
TAATTAATGTCAGTAGTATGACATTGTAAATAAGTTCAAATACATGATTT10.5882352941176471No Hit
GGGTGGAGGGGGGGGCTTGGTAAGTTGAATTACCATAGTTCCTCTGAAAG10.5882352941176471No Hit
TTTGAGTATTCTCTGAACGATCTTGCTCTCCTCTTTAGTCAGCTCAACGT10.5882352941176471No Hit
TTGTTGTTCTTTAGTTTGTTTCCTTTTGCTTATATATTGCAAATTTTCAT10.5882352941176471No Hit
GATCAGTAAACATAGCAACAATAAGTTTCCGATTAGATCACTTGAAGTAG10.5882352941176471No Hit
GTTTCATATAACTTAAGTTACCGAATCTCTTGTATAAGAGCATTTTTTTT10.5882352941176471No Hit
GTGTCTTTGAAAGAGAAATTGGTTGTGATTAAAATTAGACAAAACAGAGC10.5882352941176471No Hit
GATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCC10.5882352941176471No Hit
CAATTATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAA10.5882352941176471No Hit
CCTTGATGACTGTCTAATGCAGCGCATCATCTCCACTTACACGTTTCGTT10.5882352941176471No Hit
GTGTGTTTAAGCTGAAAAATCTTAAAATTAGTGACCTTTCAGAAAGAGAT10.5882352941176471No Hit
ACACTAACCAACCTTCTTCTTGCTTCTCAAAGCATTCATGGTGTCGCCAA10.5882352941176471No Hit
TACCTAGACTGTTGTTAGAACACTAGTTTAATATTTTTCCTTGGCTAGGT10.5882352941176471No Hit
ACCTTAATCTTACGCATTTAAGATCCGTTTGCGGTTTAAGTTCTTATACT10.5882352941176471No Hit
CCCTTGGCCGGCTATCGAACAGCCGGACTCCCATCAAAAGATGGTTGCCA10.5882352941176471No Hit
GGCATTTTACAGATTAGCTCAGATGTGGAAAGTGATGGCAGAGTGTCACC10.5882352941176471No Hit
GCATATATATATTGAAATCAGGGAAATAGGGAGCTGAGTAGAGGTTGATT10.5882352941176471No Hit
GTTCAAAGGGATTCCGCAGTAATAAGATCCGCTAAGCCCTATTTGGCTAC10.5882352941176471No Hit
ACCACACGCTGATCCTCAAGACCTGGCTGAGTTAAGGTGCTGTCTCTTAT10.5882352941176471No Hit
GTTTCTGTGGAAGAGCCGTTAGGTAACTCCGGTGCTAGCACTAGCGGAGG10.5882352941176471No Hit
GACTTCCTATGGTTCATCCTGATAGCACCTTGCTCGTTACAATAAGCGGT10.5882352941176471No Hit
GTTTATTGTTGTATTGCTGTTGTATTGCAGTTTTGAGTTTTTTGTTAGAA10.5882352941176471No Hit
ACGTTATTGATTCCAAGGTCTGTTACACGCCGAGATCGGACTCCGAGTGA10.5882352941176471No Hit
CGTCAAAAACTGGTACGAAGTTTTTTTAAGCCACCATTTTAATTACTATA10.5882352941176471No Hit
AAATAAGATTTATGGCTACACAAACTGTTGAAGATAGTTCTAGATCTGGT10.5882352941176471No Hit
TTTCTGCACGGCCCTGCCATCTAGGAGTGTTTGAGTACGGTGATTGTGTA10.5882352941176471No Hit
GATGTCATGTGTATGATTGAGTATAAGAACTTAAACCGCAACCCGATCTT10.5882352941176471No Hit
GATTTGACTGTTTGCATTGCTTGCTCCACGGCTTTAGTTCCCCCGATAAA10.5882352941176471No Hit
ATATTAATTAGCGAGATGGTTGTTTAAAATCTTATGTGGACGGCTTAAGA10.5882352941176471No Hit
CTACTAAATCATCTTATAATTATCTCATTGGTTGTTTAAGCACAATCATA10.5882352941176471No Hit
TTTACATACTTTATATCCTTCCATTTCATGTATATCTCCTTGTTCTTCCT10.5882352941176471No Hit
AAATATGTCTGAGGTTAATCTGATATTGACCAACACGTCGTTTACTACAA10.5882352941176471No Hit
GCTTTCATGGTGTAGCCAAAGTCCATATGAGTCATTGGCTTTGTGTCTTC10.5882352941176471No Hit
ATACCCTCCTTCACCTGATCACATATAATCAACATGAAGAAGCAAAATTA10.5882352941176471No Hit
GAAATACCGCTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCTCA10.5882352941176471No Hit
GTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAA10.5882352941176471No Hit
GTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCTTCG10.5882352941176471No Hit
CATGCGAAGGAAGAATATCCAGTATAGTCGATTCTCCAAATGCCGTTGCT10.5882352941176471No Hit
GTCCATATGAGTCTTTGGGTTTGTGTCTTTTAACACGGATACAATTCTTA10.5882352941176471No Hit
GGAGGGCTCTCTTTGGGCTTTCCGAAAAGGTATCACATGCCAAGTTTGGC10.5882352941176471No Hit
GCATCAGCTTCACCAGGATCTGGTTCTGGTGCATTGTTCTTACTCCATTC10.5882352941176471No Hit
CGGCTTCTCCTTCGTGGGGAAGTCGTGGGCACAAACATCGGCGCTTGTTC10.5882352941176471No Hit
ATTTCGAATTTCTCGTTTCTTCAAGACAACTCCTTTTGCTTGCATCGATT10.5882352941176471No Hit
AGATCGTTTGGAGTATAACCTGGTGAGATATCACGACGACAGGAGCTCTT10.5882352941176471No Hit
CAATAATAGAATCGTCAAATAGTCGTTAATGGACAACTATGGTCCGACAA10.5882352941176471No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)