FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_096.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_096.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTTGTTCTTTTGATCTGTAAAACAGATCAAAAGAACAAAAATTGTTT11.3157894736842104No Hit
ATGCAAGCGGGTTCTCCATGGGGAGTCCATGGATTTTATGGTTCTGGACC11.3157894736842104No Hit
TTCAAACCGCAGGTTACTTGATAAATCGTACACCTTCGTATGTCCTCAAT11.3157894736842104No Hit
AAACTATTCTTATTGCAAAAACTGTAGTGGAACTAAGCATATGTTGAGAC11.3157894736842104No Hit
CCTGATATCTACCTGGCCCTCTCCCTCACTCCACTAAGGTCTCAGTTTAG11.3157894736842104No Hit
AGTATCAGGAGTCCCTTGTTCGACCAAATCATCAGCAGACAAACGACTGC11.3157894736842104No Hit
TTGGTTTACTTGCAGTCAAAAAGATGAAAATAAGTATAGAAATAAAAGTA11.3157894736842104No Hit
ATTTCATCAAATCCTAACATTTATTTATGTCATTACTATAATCGGGTTGG11.3157894736842104No Hit
GTCATACCCTTTTACTGAACTCGAAAACGCAGCGTTTTAAGCAGCTTTGG11.3157894736842104No Hit
GAGCCATAGTGAGACTGAGAATGAGAGGAGGAAGCTTCAAACAAAGAATT11.3157894736842104No Hit
GTATATACATACCATGATTGTGTTTTAATTTTATCTATACTGTTTGTTAG11.3157894736842104No Hit
ATCTAGAGGATGGCATGATGATCAGATGGCCACAGGTTCTATGCAAAACG11.3157894736842104No Hit
GTTCTGAAACAGCTGCAGCATATAGAGACCTCTTAGATACTGAAATCCCA11.3157894736842104No Hit
AAAAAATGTAGGAAAACAAACAATATAAATTGATCCAAAATATTATACAA11.3157894736842104No Hit
GCCGTCACTCCAATCCAAGACATAGACCGACTAGAACGTGAACTCAGAAA11.3157894736842104No Hit
ACGATTGAGTATAACAACTTAAACCGCAACCCCATCTTGTAAGCCTAAGT11.3157894736842104No Hit
AGTCCCACAATTTGGGAGATGGTCTGGTCTCTTTGCCAGTCAGGGAAGCA11.3157894736842104No Hit
GAATATTGTAGAATCCATCTCTTTTGAGTTTTAATCTATTGATTTTTTCT11.3157894736842104No Hit
GGATTCGGTCGAACATTTTCCACACCTTACTCATTCAAGTGACTTGGTGA11.3157894736842104No Hit
ACCTATCCTTGGTTAGAACCAGTGTGGGTCCCCCTAAGGTACCTGGAATG11.3157894736842104No Hit
AAACATTAGCTTCCAAACGGTGATTTTCGAAAATCAGACCGTGACCAATG11.3157894736842104No Hit
AAAATAATAGAGGTAATCATAATATTGTGAATTACTTTCAAAGTTATTTT11.3157894736842104No Hit
TATGAAGACGAAGGAGATTACAAAGAAGAAAACGACAGATCTCCGGTTTG11.3157894736842104No Hit
CATGATGTCTGACTCAACTATCGTATGGGATTTGTTTTCTTAAACACTTT11.3157894736842104No Hit
ATATATATTTGAAAGTAAGTCTCTCTTAAAANTTTCTTCTTATAGAAGAA11.3157894736842104No Hit
GTCAAGTGGGCACCAATTACCAATATAGTATACATATATTTTAAAATAAT11.3157894736842104No Hit
CGATAGTCTGATCTATCAGTCGTGGTAGGACTGATTCTTTGATTAGGACT11.3157894736842104No Hit
GTTCGCTTGAACCTTGAACTTTGCTGGCTTAAGATGTGCATGTAGTATCC11.3157894736842104No Hit
GCTATGTGACACAAAAGGAGATTTCAAAGAACTTAGTGATCAAAGTAAAT11.3157894736842104No Hit
CAATCCCACAGAGGAATGATATATGAAGTGAATTCATCACATAACACTCC11.3157894736842104No Hit
TGATAGAAGCTATCACTCATACCTGGTGGCCTCCTCCTTCCCATCTCTGG11.3157894736842104No Hit
TCAATACAAGACAAGATGCGCACACATCTGATCGCTCTCCCCAAAGATTT11.3157894736842104No Hit
CGTTACATTTAGTCTTTGGATCTGATTTTAAAATTTACGTGGAATTTATC11.3157894736842104No Hit
TATTTCAAAATATCATACGTTACAACATTCAAGACCTAAAAAAAAACCAA11.3157894736842104No Hit
AATGTAAATACTTTAGTACCTGATGAGTCTTTGTCTTTACCCATTTTTAC11.3157894736842104No Hit
ATCCTGATGAGCACTTTGGAGCATTTGGAGGCTTGTAGCTGAGCAAATCA11.3157894736842104No Hit
AAATAAGATAATTATCACACGTCAAATTTTAGATGTCAAAAACCATTTAA11.3157894736842104No Hit
GAAGGTGGTTGAGAAATTAGTCAGAGCATGGTCATGTTCAGCTTTTGTGT11.3157894736842104No Hit
GTAACCAGTTTTACGTCGTAGTACGAGAGAGAGAGAAACTTCTGTTTTAC11.3157894736842104No Hit
ATTCTAATTAATAAGAATGTGTTTGATATAGATTTTTGTTTTTTTTTTTT11.3157894736842104No Hit
GTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAG11.3157894736842104No Hit
GTTTTTTTACACTGTGATATGGATCATTTTCAAGGTCGTCACACTATTGA11.3157894736842104No Hit
GCTTTGAGTATTAAGTCCAATGGAGTGTCTGAAGACTATCTATTCTACAA11.3157894736842104No Hit
CTATCTCCTCGCATCTCAATCCCCTCGCATCTCAATCCCAGCCAATCCAC11.3157894736842104No Hit
TACTTATCCTTGGGAGGAGCACCATTAGCTTCTCCTCCTAAGCCATTTTC11.3157894736842104No Hit
AAAGTACTTTGGGTAGATTCATGACATAATTTCTGATATATATGCTTTAA11.3157894736842104No Hit
GATATTGTCATCTCATTGAATGGGGGTTGTAAATATCTCAGAATATCATT11.3157894736842104No Hit
CCACCGCACCTTCCTCTTTTTCTCTCGATCTCTAGGTTGCGCCCCAATTT11.3157894736842104No Hit
ATGTGTGTAGGTTCATCGAATAGTGAAAGCAGAAGAGTGGGATTTGTTCA11.3157894736842104No Hit
ATCAAGAAGCGACCAAATCTCATGGGGAACATACACTAAGAGCTGGTTGA11.3157894736842104No Hit
GTTCAAGGTCTGAACCAGCACTCCATCTAAATACTTGAACATCAAGAACA11.3157894736842104No Hit
CTACATTAAGAAGAAAATACTTGAAAAGAAATGTGCTTTATATATATCAA11.3157894736842104No Hit
CGTTAGACCGTGTAGTAGTGACCTGTTTAGTGAACATATTTCCTTGGTAG11.3157894736842104No Hit
GTTTAAAACCAGCTCAACCTGATTTTAATCAAATGAACAGGATTTAAACC11.3157894736842104No Hit
CTATAACGAAGTAACCGAGTATAAATTAAAAATCTCTAATTTTGACCAAA11.3157894736842104No Hit
GGTTTATATGCCCCTGTCTACCTAAGTATTTAGGATGATTTAATACGAAA11.3157894736842104No Hit
ATTTAATTTTTCATGTTCTTGTATATTTTTCTTATTTCTGCAAAGATTAA11.3157894736842104No Hit
ATATAATACACACAGAGTTATAACAGTGGCAAAACTTTATGTTACAAAAA11.3157894736842104No Hit
CAGATTAATCCTTGCATGATTTAATAAATACATATCCAAATTCTCCGGTC11.3157894736842104No Hit
CTCAAGAACAAAAGATGAAATTAGGTTCAGCTAAAAAAATGCGTCGTCCC11.3157894736842104No Hit
ATATTTTAGAGGCTCATAAAGGTCCATTTACAGGTCAAGGCCATAAAGGC11.3157894736842104No Hit
GGTAAGGAATTGGAATGTAATAATATCGATTCATAATGGATTCATATCGA11.3157894736842104No Hit
GAGTTACCCCATAAAAAGATCCACTTGTCATATAACTATCGTATTGGAAG11.3157894736842104No Hit
GGATATTATCAGTGCTATGATAAAATCTCAGGTGTTTGGAGCTATAATAT11.3157894736842104No Hit
CTATTTTGGGAAACATATAAATCTCATCGAGAAAGCAAAGGAGTCGCAAG11.3157894736842104No Hit
AGTTTAGATTAAGCCTCCAATGCTTGCTTTAACCGATCTTGGCTAATCTT11.3157894736842104No Hit
TTCCAAGTCAGTGTAACCAACTGTTCCATCAGAGGATGCTGAATAAACCA11.3157894736842104No Hit
ATTTCGTATATAGAGGACACCATATCGCGAAGTGACGTACTTGTTATGTA11.3157894736842104No Hit
CATCTTCTTTAATTATCGATTGAGGGTGAGGACCGAATTTTTCATTTGCT11.3157894736842104No Hit
TTCATAGACTATGCCTAAAGGCTTTTATATTTATGATCTTTTTCTTTCTT11.3157894736842104No Hit
ATAAAAATTACATATACATAAAAATTACAAAACTCTAAGAACATAAACTA11.3157894736842104No Hit
GACCTGATGGTCTTGCGTGCAGTCTTGTTCTTAAGGAGGTATGTTTGTTG11.3157894736842104No Hit
ATATAATAGTGTGCCGTACAAATCTCCTATTTAATAAATGCTTCCAGACA11.3157894736842104No Hit
TTCATAATGTTCCATTAAAGATAGATCAAGCTTCAACCTCATTTGGTAGT11.3157894736842104No Hit
AATATGTGTACGCTCACACCCCTCAATACGGGATCAGAAAAGAAAAGTTT11.3157894736842104No Hit
CAACATTCTTGATCGGAGTCGCCAGCATCTTTATCTTCATCTTCTACAGA11.3157894736842104No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)