FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_092.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_092.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAATAGCTTTTCACCCATTAAAGAACCAATTAATGCAACTGCCGCTTCT337.5No Hit
ATCTTATGTTATTAAATGTGAACATCTGTGCCCTTAAATAAATTATATAA112.5No Hit
GCGCCCGTCTATCCGCCTCATATCCAGAATTCTCAGGTGCCCAAGCGGAA112.5No Hit
ATTAGTATCTGTCAGCTCCACGTGTCACCACCTGTCTCTTATACACATCT112.5No Hit
ACTTAAATCAGTTCACAGGAAGTTTCAGAGTAGCAGATTACACTTGAACA112.5No Hit
TCCATGGACTGGCCCAATGGCTGGGCTGGGCGTGGCCCTTTGCCGTGCTG112.5No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)