FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_091.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_091.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTTCTCTCCTCAGCCGCTAGAGGTCATATCTCTCTCCTTCCCAATGC23.8461538461538463No Hit
CTTGCTGAAATCCTTGATGAATCTTCTATAAAAATGAGCATGTCCCAAGA23.8461538461538463No Hit
GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAG23.8461538461538463No Hit
AATTTACATATATCAATACCTAATTAGAAAAACTTGATTCTGAACCTTTT11.9230769230769231No Hit
GATACATATAATTCAGAAGAATACGTAAGTGATTCATAGACAGCATCTCG11.9230769230769231No Hit
GAATTCACAAGGTATAATGGATCTTATGCAAGGAAATCAAACAGGGAATT11.9230769230769231No Hit
GAATTGGTGAGCAAAGAAGATAATCCAGATCCGTATGGTATAAATGTGAA11.9230769230769231No Hit
TCACAGTCGATGTTGACTACTGGTTGAGACTCTAACAATGAATGATATGC11.9230769230769231No Hit
GAGTCCCGCAGGTTTACTATCTCGAATTCGTACAAGGCATGTTTAATCTT11.9230769230769231No Hit
CCTCTTGGCCTAAAAAAAATAATCTTTCTCGATAAAGTCGGTTGATTAGG11.9230769230769231No Hit
TTCTTTACCTTAATATACCTTTTTACCAAAAAAATTCATAAAAATCTTCC11.9230769230769231No Hit
CCCGTATAGTCAGAATCAGAATAGCATGTTACCAGGCACGAAACCTCACC11.9230769230769231No Hit
ATTAAAAACAACAACAAATCCAAATAATAATACTAAATATTTGTAATGCG11.9230769230769231No Hit
ATATATATTTATATATATATTAATAGAATTGTTAATTGAATTGATTTAGC11.9230769230769231No Hit
GTTTTATGATTCGTCTTCTTGATTCTTCATCCAGTTTCTCACAGTTGTTG11.9230769230769231No Hit
GTAATTAATTTAAATGAAATAATTATGTGATGAGAAATTTTAAGATAGGC11.9230769230769231No Hit
GTTCCTTAAATTCTGTAGGGGGCGTAGCTACTGAGATCAATGCAGTCAAT11.9230769230769231No Hit
TTACTTTGCTTTCGAAAGAGTGATATTCTGATATTTTTGAGAGAATTTAA11.9230769230769231No Hit
CGTAAGGGTTTAATGAAGAACAAAGGGGTAAAGGAGCTAATTTGTAGGCA11.9230769230769231No Hit
AAAGAAAAATCCTTAGATATTTGAGACTAAAACCCTTAGATATTAGAGCT11.9230769230769231No Hit
TTGCTATAGTGATGGAGACAAAGAAATATTGTATATGAGAGATGAGAAGT11.9230769230769231No Hit
CTTGCTGAAATCCTTGATGAATCTTCTATAAAAATCAGCATGTCCCAAGA11.9230769230769231No Hit
ATCAGGCACCCCGCAGTAAGATACCTCCACACGATGTTTGCGAAGAAGGC11.9230769230769231No Hit
CATCCAAAGTGCTCATCAGGGTCTAATCCTTGTTTGTACCTAATAAGACT11.9230769230769231No Hit
CATATACATCCTGAGTTCACCCCATTCTTAGTGGATCAACTTTACCAGAA11.9230769230769231No Hit
CCCTTGTATCGCTGCATTTGTTTCGACCACTATGATCAATATCAGACTGA11.9230769230769231No Hit
GTACATATGTTGATTACCTGATATTTTAACCGACCTAATCGAGTCTCATG11.9230769230769231No Hit
GACCATATTCTTCTCCAATCTGAGTTTGACTCACGTCTCGAATGAATTCA11.9230769230769231No Hit
CCCTTACACCCTTTTCATTCAGACCCCAGTCCTCTTTCACGCATTAGGAG11.9230769230769231No Hit
ATGTCATTAGGTGAGGCATACTACGTATTGACTTTATTGGTTGGTTTATG11.9230769230769231No Hit
CTGTAATAATATGGGTGACAAATTAAGACATGAGAAACATTCTTGTGCTC11.9230769230769231No Hit
CTAATAGATTCACGCAGATGCTATAGTTGTGTACTTTTTGTTTACAACAG11.9230769230769231No Hit
CTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACT11.9230769230769231No Hit
CGTTAAGGTTTTTGCTAGCTCAGACAATTTTTCTCTCAAAACAGCTGATC11.9230769230769231No Hit
ACACCACGCAGACCATGCCGGTGGTGAACTATCGCAGCCTGACCGCCACC11.9230769230769231No Hit
CCATTACTATGTTTTTCCTCTTGGAGAAGTTTCTGTGTTGGTTTCTTCTG11.9230769230769231No Hit
TTATGGTTTTTATGAATTGATTGAATCCTTTTTTAGGTGAGTGTTCTTAA11.9230769230769231No Hit
ATGCCAAAGGACTCACAGTTCAAAGCAGCTCATAAATTGGTTCAACACCT11.9230769230769231No Hit
TCATTTGAAACGTCTCTTAATTCTTTGTAGAACTCAGCAATAGAACTGTC11.9230769230769231No Hit
GGTTATTTGTGTTTGTTCAATAGCTTGACTCTAGCAAAATTGGATATGTT11.9230769230769231No Hit
GCATGAAAGATATGATTACAAACTGTTTTGTAAACAATATCCTTTTCTTT11.9230769230769231No Hit
AAATATAAAAGTAAATATTTACGCAAGTTTCATCTATTTAAGAAATCGTA11.9230769230769231No Hit
ATGATGAGATACCTCAAGCACAAGCCTTGTGGGATGATCCTGAACCTCAA11.9230769230769231No Hit
GGGCTTTAGGTAAATGTTTCATCTAACTCTCTGTATACATTTAATAATTT11.9230769230769231No Hit
ATATCATACGATTGATGTTTGTTAGAACAATTGTATGTTATTTTGGAAAG11.9230769230769231No Hit
ATAGGGAGTATTTTTGTCTTGCTAGTCTTCGACACAAGAAAAGGAATTTT11.9230769230769231No Hit
ATGTATTTGGTGAGTGGGACGGACATATATATAACCCACCCCCTTAACAA11.9230769230769231No Hit
ATGGAGATATTGAGAGGTACAAAGCCAGACTTGTTGCAAGAGGATTCACA11.9230769230769231No Hit
TTTTGAGGTTCTGAATGAAATTGCTGCGGAAGAAAAATATTGAAGAGAAG11.9230769230769231No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)