FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_089.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_089.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATGACTTATATGAAACACCACAATTTAAAATGAAAATCTAAATTAT22.7027027027027026No Hit
CTCCATCTCCACAGTCTCGGGGCTCTCTCCTCTGTCAAAAGTAAGTAAGA11.3513513513513513No Hit
GTGAGGGGTCTTGTGGTTTCAATGCCTAGATCTCTGAGTAGTGCCTTAAG11.3513513513513513No Hit
GTAGTTCTGAGAGATGGAAAGGAAGCTGTGTTTTTTAGTGTTTGAGCCAA11.3513513513513513No Hit
AATTGTTACTCTAGATGGTGAGGATGTTGTTGACTGTGAACCTATATTGG11.3513513513513513No Hit
AGCATTTGTTGTTAAGTTATTGGCAAATTTGGAGATAAATAGTTGTTTGT11.3513513513513513No Hit
GTGTTACAACACAGGCAAAGAATGTTTACGTTGCATTGCACGGTCTACAG11.3513513513513513No Hit
ATGTTAACTAATCGATTACGATAAATTGGATCGGATTTTGCCGTTTTTTC11.3513513513513513No Hit
CAGGAAAAATCTAACTAGGGATCTGTATCAAATGCAAATTGTGTTAAAAG11.3513513513513513No Hit
GATTAATAGTGTTTTGCGATTTCGTGTTTTAAATTTGAACAATGGTAAAA11.3513513513513513No Hit
GGTATAGGAAGAAGCCCTTTCAAATAGAGATTTTTGCTTTCGACCATATT11.3513513513513513No Hit
CCAAAACACTAACCAACCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTA11.3513513513513513No Hit
ACATAAGTAAAGCAACCAAATACACTTCAAATTACTTGCTCGAGTGACAT11.3513513513513513No Hit
CTGTGAGGTTATGCTGAGTAGCTTGTCTGGGTGGATGGGTGGGAATCCAT11.3513513513513513No Hit
TTCTTTGAGTTTGTTATTTAGTCTGATCAACTTTTCTCTCTAAATATTAA11.3513513513513513No Hit
GCAGTATCTTGCGCTTTTGGCTTTTAATTTTCGAGCCTCCTATTTATCGG11.3513513513513513No Hit
GTATAACACACTCATTGTGATTAGATTACCTATCGGATAATAATTGAACA11.3513513513513513No Hit
CTCATAGACTTAAAACAAAAATAATATTCGAAAATAATTATAAAATCTTT11.3513513513513513No Hit
CTTGTAGAGACCGCTGTTGAAAATATCTTTGATTGACCAAGAAAATACTC11.3513513513513513No Hit
CAGGGGAACGTATAAGCCGGTTTGGTTGTATAATTCAGCCGGATATGGGC11.3513513513513513No Hit
TGTTTTGTCAAACCACCCATAAGAATCATATTCTGGCTTTTATCGGGAGA11.3513513513513513No Hit
GTTCTTTTTTGAGGCCTTGGTTCGTAATAAAAGACGAAGCATATGGAGTT11.3513513513513513No Hit
CTATATGTCCTCCTGCCTTTCAGAGGAATGATTTTGAGTTGAAACCCCAA11.3513513513513513No Hit
GGTCAAGCATATCCTTCAACTCAGAATCTGCAGTTCTAGGAGGTAGATTC11.3513513513513513No Hit
TTACAATATTTTTGTCACATCACCAATTTTCCTTGGTTCTCTAATCTGCG11.3513513513513513No Hit
CAAAATATATAGGTGGAAGTCGGATCTCTTCTTATTTGTTCTTGTATTTG11.3513513513513513No Hit
GATCTGATTACTCGAATCATTGACCAAAATTCTAAAGATTATATCATATC11.3513513513513513No Hit
GCTCTATTCCGTATGCGAGTGCAGTTGGGAGCATCATGTCTGCAATGATT11.3513513513513513No Hit
TTTTGAGACATGGGTACAAGACCCTTTACATGTAAGACCGATTGCTCATG11.3513513513513513No Hit
TCAGAATACTGATAAGATCACCTGAAATACAGAATGTAATATAAAATCAA11.3513513513513513No Hit
ATATTTAAATGACCATTTTCCCGTTTAGGAAGTTTATCTTTACTAATATA11.3513513513513513No Hit
GTGAAATACTAGTCTTTTTATACAGCTCTTATCAAATTACATACCAAATA11.3513513513513513No Hit
GATTAAAGTGTTGAAATGTCCTAATCCTTAATGGAAGAAACTAACTTGTA11.3513513513513513No Hit
GTTCTTCACAGACAGAGTTTAAGACAACATGTGAATGTCTTCTTGCTCTT11.3513513513513513No Hit
ATATAATAGTGAGCCGTAAATCCCGTATTTAATAAATGCTTCCAGACATT11.3513513513513513No Hit
GTTTTTAAATATGTTATTAATTAGATTAACTTATTCTTTGTCATTTCTAT11.3513513513513513No Hit
AGCATTGGGACGTCAACAATTTCTCTACTTACTTAGCAAGTTGAGAGTTC11.3513513513513513No Hit
TCCCAGTCTTGAGTCTCTAAAACTTGTGGGAATAAATCTCGAGGAAGACC11.3513513513513513No Hit
ATCTTTGTCTGTTTAGGGTGTAAGGCTGAAATGTCTAATAGTAGTTCCCG11.3513513513513513No Hit
TTTTTCTTGTGCCAATGATGATGTTCCCCGTCGGCATATTACGTGGAACA11.3513513513513513No Hit
CAATTCCTTTTCGCAACACCCGAAAATGGGAACCCAACGAGCGAGAGAGT11.3513513513513513No Hit
ATATATACAGTGAAGAGTATTTTAAACAGAGTCGCCTTTTTCTTATTTCT11.3513513513513513No Hit
AAATAGAGCACATGAGTACATAGCATGGGAATATACATAAATTAATATAA11.3513513513513513No Hit
CTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTT11.3513513513513513No Hit
TGCTTATTCAAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATT11.3513513513513513No Hit
ATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG11.3513513513513513No Hit
CTGAGCAAGAACACAAGTGGTCCTATGGAACTGATCAGATGACAGGTATT11.3513513513513513No Hit
CAACATACCCGTATAATACTTTGTACAAGCATATATATACAATTTTATTC11.3513513513513513No Hit
ATTTTATATAACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTTCA11.3513513513513513No Hit
ATCTCAAGTCCTACGCAACCTGTCACGTGCTACCCATGGATCCATCCGAA11.3513513513513513No Hit
TCATATAAATAGGCAAAATCAAGTAAAAATGAAAATACCTATCTACTCGC11.3513513513513513No Hit
GATGAATCCCTTCCTAAAATATTAACATATCCTCATTTGTTTGTTTACGT11.3513513513513513No Hit
GATAAGTTACATGAACAGATATATCATAAGGGCTGTCACAATAACTAACT11.3513513513513513No Hit
GCTCCTAATCTAATGACAAGTGTCGTCATCATATAGATACTAAGGAGCTG11.3513513513513513No Hit
ATATGTTACAGTAAACTTGAGGTTTACTTGTACAGTTGAAATTTTTGAAT11.3513513513513513No Hit
GTCTTACTTTCTTCTGTCTTTAGTACTATTGATTTCTATTCAGACAAGGG11.3513513513513513No Hit
ATACCTGTTTGAGCCCATTAAATTAAGGGGCGGTAAGCGTATTTTTCTTT11.3513513513513513No Hit
GTGCTTTAGCATGGTTAGCCTCCAGTTCTTAATATTATTCTCTTAGAATC11.3513513513513513No Hit
ATATTCGCCTTAGTGTCTATGAAGATATTGATCCCACTTTTCCCAAGTGC11.3513513513513513No Hit
GTATACTATATTGTTTACATCAAAAATTACCAAAATCCCAGAAATCTATA11.3513513513513513No Hit
GTTTTAGATCGGGAGAATCGTACGGTTTTATGAAACCATGTGCTATGGCT11.3513513513513513No Hit
ACATTAATCTACGCGTCACTTTCCATTATGTATGACATATTACACGAAAA11.3513513513513513No Hit
GTTCACCAATCCGACCAGAAGCATATTTNGAGCATATCAGTCACCATGGG11.3513513513513513No Hit
AATATGGAGAAGACAAAATTGTTTCAAGCACCGACAGAACCATAAGCGGC11.3513513513513513No Hit
CCTATATATAGATGTGACCTTTTACGGATATTGATTTGAGTCAATATTCA11.3513513513513513No Hit
CTCCAAAACGGGAGAAAATTCAAAATATAAATAGAGATCTCTATTGCCGA11.3513513513513513No Hit
ATTCTGTAATATGCTCGATAAAAATCAAACAACAACGGCAAGCAATTGCA11.3513513513513513No Hit
GTGCCAAGAAAAGCGGCATGGTCAATCTAACCAGTAGTGTTAACAGGCGG11.3513513513513513No Hit
TCCGCAAGCAAAGCAATGATATGGGTTTTTTTTCAATGTACGATCATGTG11.3513513513513513No Hit
CCTTTTGTTTTCTTATTTCTGATTTTATGAGTATTATTCAGACAATGATT11.3513513513513513No Hit
TGACAGTAATGACCTAAACAGTGGAAATTTTCGGGTAATTTTTCCGGTTT11.3513513513513513No Hit
ATAGATTAGCTAATTCGGGCNATATTCCAACAGAAATCTGAAGCGTGACA11.3513513513513513No Hit
GCCATAATATATATAGGAAAGAAGATACGTTATGTTAGAGATTTTTAGTT11.3513513513513513No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)