FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_087.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_087.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCTTTAGTTGTGTTCTTCTTCTCTTAAATGACTTAAACGATATACAT14.761904761904762No Hit
GAATGCCACGCTTAACTTTTCGGTAAAGAGAAGAGACCTTTGACGAGTTA14.761904761904762No Hit
CATAATATAAATACATTAAAAAAAAAATCCAACAACTTGATGCAACAATC14.761904761904762No Hit
GTGACCTGAGAAAGTACCAAAACTTGGACTTGGCACGGACTTCATTTGTG14.761904761904762No Hit
GGGCAGAGGGACCATCTCATCCAGTCAATACGGGTCCACCACTTCATCCT14.761904761904762No Hit
GTACAGAACAGAAGCAAGGATCAGTGTCAGAACTCAGAAGAGTAGTAATA14.761904761904762No Hit
GCTCTAATTTTTTCTTTATTTGCATTTTATGGACTTATATTGAATTTGAA14.761904761904762No Hit
ACTCTGTGATAGTGGGTCTAGTATCAATCTCATGTCAAGTGACATTGCGA14.761904761904762No Hit
TTTTTTGCACTTTCTAATAAGTCATAGAATTTTTTTGAACGGTTAAGTAC14.761904761904762No Hit
GTGATTACCTGCTACATCCACGATAGATAGCAAGGTCATCAAGAGCACTC14.761904761904762No Hit
AAAAATCCACTGCGCCGCTTAGCGGAAATAAAAAAAGAGCATGTCGAACG14.761904761904762No Hit
TTATAATATATATACCTGCAAGTGCTTCATTAACATTTTTTGGAAGTAGT14.761904761904762No Hit
GTTGTCACCAATCTGATCATTTCCTGAATCTTCTCATTCATATCGACTTC14.761904761904762No Hit
GAAAACAATAACCATGTACCGTGAATCAGGATAGCCTGTGCATATGTGTC14.761904761904762No Hit
CCCTAAGGGATACAACTCAGTCAACCCAAGAATAAAAAATTTAACTTTTT14.761904761904762No Hit
ACCTAGATGGGCATCATTCGAACTGGCATAAGACGGAGACAAGCTATCAC14.761904761904762No Hit
GGGCATACAGGCGCGCAATCGCGAGCAGAACTTCGCCCTGAATGCGCTGA14.761904761904762No Hit
ATTGTAGATAGTCTTAAGTGGTACAAAATTTGTATCACTTAAAAATGATG14.761904761904762No Hit
GTTCAGGACCTTGGGTTGTCACATGCGTCTGAATTTCATATTTCCGTATG14.761904761904762No Hit
CTTTTATCCATTCGATACTCTTTTGAATGTCATGAGTGGGTCGTTTTTGT14.761904761904762No Hit
ACGGATGATAGTCACATGAACAGACGAATTAAAATAGTGTATTTGATGAT14.761904761904762No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)