FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_082.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_082.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAACCAGAGCTTTTCAGATTTTCAAGAAATTCAAAGTTAATCACACAC21.574803149606299No Hit
GATCTCGGATGCTAGAGTACGGTAATGTTTGCTATGCTTATGGTAAAGTA21.574803149606299No Hit
CAAAAAATCGGGAAATCACATATATATCTTCTTCTATGTAAAATAAAAGT21.574803149606299No Hit
TATTATTTCTGAGCCTTTTTATCAAAGATCTTCCATCGTCCTTTATCTGG10.7874015748031495No Hit
GCAAAAATGCTGAGGCTCTTCTTTGTTATTTGACAACAGTTCGCTGCAAC10.7874015748031495No Hit
GTGATATAATGTATACTATTGAAAATATATCTACTAATCTAATACTTATA10.7874015748031495No Hit
CATCTGAACACGAGCTCCATCTTTCTCCCGAGGAGAATCTAAAGCTCTGT10.7874015748031495No Hit
GGTCACGTTAGGTCAGATTAAGGTCCTCCACGTCCCATCCTCCCACCCAA10.7874015748031495No Hit
ATGCCAAGGTTTAAGATAAAAAGGAAATAGGATTTTTATCTGAATACCAT10.7874015748031495No Hit
AGTATTAACTTTGCAACCTTTGCGAACGATATTGCATGACCCAAGTCAGT10.7874015748031495No Hit
CTGGGTGACCGCACTCTTTGTTTTCAGTTGTCCAAAAGGGATAAAAGAGT10.7874015748031495No Hit
CCACCATAACAGCCCATTCAACAAACTTCCCAAAGGCCTCATCTTTCTAT10.7874015748031495No Hit
ATTCCATATTGATTCGAACCAACCCATACGCTCCCATTTTTAATAAGATT10.7874015748031495No Hit
CGTGTAATACCTATATAGAAATCGATCATAACCCAACATAGTAAACAATA10.7874015748031495No Hit
GAACCATGCCTTGAGCCATTGGGTAGACTTTTTCCGGGGTTTAGAGTACA10.7874015748031495No Hit
CTTCTAGTGTGTGTACAATATCTGGCAATATACAAGAATATGACTAACCA10.7874015748031495No Hit
CTCAACCTTCCAAGGTTTTGCAAGGAACTGCTGATTTTGAAGAGACCTTA10.7874015748031495No Hit
ATCTAATGGCTCAAGGCATGGGTCGTGCTCATGAGACCATCTAAAATCAG10.7874015748031495No Hit
CAAGAGTGGTCTACAACAATTAGTTGATTACTAAGGCAAGCTATTCAAGT10.7874015748031495No Hit
GAGTTTGTTGTATACAAAACAAAAAACATAAAAAAATATTTTCAGAAATT10.7874015748031495No Hit
CCTCATATCCTAATCCTATACCCTAAATCCTATACCTTAACCCCTATTCC10.7874015748031495No Hit
ATGAAACTGCGCAACAAGTCAAGCAAACTTTACAACGTTACAAGGAGCTT10.7874015748031495No Hit
CATTTATACTATGTGGCGCTTTTTGTTGTCTTCCATCGGTAAGAGAAAAT10.7874015748031495No Hit
TCCCCTAATGTTTTCTGGCAGCCGGTTACTTATGAAAACAACAGCCAACT10.7874015748031495No Hit
CTCCGATGGAGAATGTATCTGATAGGTAAACATCTTTGAATAGAGTAGAG10.7874015748031495No Hit
AAACAGGATCGATCGATCTAGATCTCGTATATTCTCCAAATCAAGAATTT10.7874015748031495No Hit
CTATGAAGCAACTTTTCGTTTCATATATAGTCATTATCTTTACAGTTTCA10.7874015748031495No Hit
GGACTCTCGCCATCTAGGGTGCGGCACTCCACCGCTTCGCCTAGCAGCAC10.7874015748031495No Hit
GATTATTATAATCGATTTTTTTTGACATATGATGCGAAGAAACCGCATAA10.7874015748031495No Hit
GATTGCACCATGGCGACAAGCTCTGAACAGTATGTTTCGAACACATGACA10.7874015748031495No Hit
CCATGTTATTATGGACATTGAATTTCATGAACTACAGTAGAACCTCTATA10.7874015748031495No Hit
GTATGGTTTGCCAGCACTAACACAAATTATACTAAACATAACTATTTTCT10.7874015748031495No Hit
CCCGCAGTGAGGAGGTACATGGTAAGTACAATGAGGAGTATGTGGCAGCT10.7874015748031495No Hit
CCATTATTCAAAGTATATAATTTGTATTATGTTGGAAACAAAAAGGATAT10.7874015748031495No Hit
CTTATATATATATTAGTACACAAATCTCTCAATGCTCGATGTGGGACTTT10.7874015748031495No Hit
CTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCCGCCGCCCGAT10.7874015748031495No Hit
ACTAATACCACCTCAGAATCCTTATCCTTCCTTCTCAAGAGAGCCCTGAA10.7874015748031495No Hit
GCATGCTAATGATCAATGAAATTTGTAAGTTTACTTTATCCAAATTATCC10.7874015748031495No Hit
CAGTGGTACGCCCTGTCATTCGACCACTCACTCGTGCAACGCAGTCGAGT10.7874015748031495No Hit
GAGAAAGAGATCGCTCAATTCCGATTTTTTCTTTTTCTATTGATTCTTTT10.7874015748031495No Hit
AGATTCTTCAAGAGTTTCGGGTCCCAGAAGTGCATGATAAATACCGCCAA10.7874015748031495No Hit
TTACAAGACTTCATAAAGATACTACTTCTTTAGATCCAAAAATAACAAGA10.7874015748031495No Hit
CTTCAAATATGGGCAATTGAAGCTATTCCTCTACTTGAAGCTTTGATTGG10.7874015748031495No Hit
CTCTTTAGCACATTTTGGTTTCTCCAATTCTTCCTGGGTTTTGCATCTCC10.7874015748031495No Hit
ATACTCCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACT10.7874015748031495No Hit
GCTTTCAAGAATGACAAGATGTTGAACAAAGCAGAGTTCACAGTAGAAGG10.7874015748031495No Hit
ACATAAATGAGGTTCAACAATACTCAAATGAAAATAAAAACAAAGTACTG10.7874015748031495No Hit
GTAAAAGATTGTGTAAGTGTTGTTGATCAGAGATTTTGAATATGGTTCAC10.7874015748031495No Hit
GCGTACTCATAGGTTTGGTGGTCTGAAGATGATGATGGCGATTACCAATG10.7874015748031495No Hit
CTCTTAACTCTTCTTCAAGTTGAGACGCTGTTGGAGTTTCAGCTTTGGTT10.7874015748031495No Hit
CTTGAGGAGTGCTTTGACCTGAAAAAAATCAAGTTTTCAAGAACTTGTAC10.7874015748031495No Hit
GTTTACGTGACCGGACTAATAAAATGAAGTATCCAGGCTCCGTTTAGCAA10.7874015748031495No Hit
ACGCTATAGAACACGCAGCTAAGCTAAGCAAAGGAGGAGAACTCATAACC10.7874015748031495No Hit
AATCTGAATAATACTCATAGAATACATAAAGAGAAGAAAGAGTTTAGAAG10.7874015748031495No Hit
ACTCAAGCACAGAGGCCAAACATTGACGAAGCTCCGATATTCCGTCCCAC10.7874015748031495No Hit
ATAAGAAATCATATGAAATTCCGGACTGACAAAGCAATCCACAAGGACTA10.7874015748031495No Hit
ATTTGATTTTTGAAATATTTCTGTTTTTAATTTCTTTTGTTTTGCTCTTT10.7874015748031495No Hit
CAAGATGGAAGAAGATAGTGATAATGAATCAGATGATGGCAACAGGCCAC10.7874015748031495No Hit
GTGTGGATTGTTATGATCTCGGATGGTGGGGTAATACTTTTACCAACATC10.7874015748031495No Hit
AACTATTGTTTCATCAATCATCTCCTTGTACAAAAAATCCATCCTTTCAT10.7874015748031495No Hit
GTTAATAAGCCCGCTGGTACTGAAACCATTAAAAGAACACCCAATAATTT10.7874015748031495No Hit
GGTAAGAATAGGAAGGACGGAAAAGACTTCCTTACTAGAAGAGGATGGTA10.7874015748031495No Hit
GTATTATCGCGGGTCAATCTATTGGCGAACCGGGGACTCAACTAACATTA10.7874015748031495No Hit
CTATAACATAGTTATGACCTAAAATACGAAAAGAACTTGAATTACAAACA10.7874015748031495No Hit
ATCATTGTCTGAATAATACTAATAAAATATAAAATTGGAAAACAATGGGA10.7874015748031495No Hit
CCTAGATATAGAAGAAAGAGTTCCGGAATTCTTAAATATGGGACTCTAAA10.7874015748031495No Hit
ACTAACAAATGGCTATATCTGTCATTTGAAGCTATCCGTACGCACACCGG10.7874015748031495No Hit
GGAGCTTCTTGCTTGCTGTGTGATTCGACCAGTCCTAAATCTAGCTAATC10.7874015748031495No Hit
CACTATAACAGGGGATTCAAAGAAAAGGGTTTTGTAAATTTAAAAGGACA10.7874015748031495No Hit
GCTCTAAGTATGCAACACCAGAAGTTGCTTTCTCAGACATTCTCTTCAGA10.7874015748031495No Hit
GTTGTTGAGGCTGTGGAAGCATCTTGTGGGCGTACACTAAGAATCTAAGA10.7874015748031495No Hit
GCTTTAGCCATCTTGGACATGTATCATAACCAATGTGGCTTGAATACAAC10.7874015748031495No Hit
GAACCTAGAATGAGTCTAGTATTTGTTAAAATTGATTTGAGAATTTTTAG10.7874015748031495No Hit
GACTGGAACACTTAGAGGATTTCCCATATCAACCACGTCCATTCCTCTCT10.7874015748031495No Hit
GAAGTCAATAAGACAACACAGGTTCCATGAAACATAGTTTGGATCGGCAT10.7874015748031495No Hit
AATCACTTCAAATCAAAATCTCACCAAATTCCCCCAAATCATCATTCCAA10.7874015748031495No Hit
CCCATAAATCTCACAGATCCACACAAATCAAAACGCGAAATCACTCGTTT10.7874015748031495No Hit
GAGTTCCACCCACCATGCGTCACAAACACACCCGTTGCTTCGTGTTTCAA10.7874015748031495No Hit
GTTGGTGTATACTTANTTTCTTTCTAAAATAATAATACAGTAACTTGGAC10.7874015748031495No Hit
CATTTCCTAAATCAACACTTATGCTTCCTGAATCAGTACATATGCTTTTG10.7874015748031495No Hit
GAACAATCTTGATCTATCAAAGGGTCCACTTGAGATAAGGCCAATGGAGA10.7874015748031495No Hit
CTATATAGATATTCGAACTCTGTCTGGTTGTCATTGAACTCCGTCTGGTT10.7874015748031495No Hit
CATATGTAGCGATTTAGGAAGCATATGTAGCGATTTAGGAAGCATATGTA10.7874015748031495No Hit
GGTTAAGGTTAGATACCTACAAGATGAAATCTGGTAGGCTTAGTCATCCG10.7874015748031495No Hit
GTTTGTTGGTATAACAGGATTATTATTCACCCGTTGGATTTATTCAGGAC10.7874015748031495No Hit
AAGAAAAGTAATGTAAACCTACTAAGTAATAACTTTCAAATTCAAAGAAA10.7874015748031495No Hit
GGGTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAA10.7874015748031495No Hit
TAGAGATTCATCGTTTAAGCGACGGGATTACAACGTATCCTACGGCTTAT10.7874015748031495No Hit
ATCAGCATGAGCCAGATGACCATGATTCAACCTTGCTGCACTTTGCCCAA10.7874015748031495No Hit
CTACTAGAAGACCGGATCCCAGAAAAACTAAAAGAAAATCATGTATTGGT10.7874015748031495No Hit
CATAATAAACTCACTAATTGATCAGCAAGCATGAGAACAGTTTTCAGTGT10.7874015748031495No Hit
GAAGTACCCTGAGATACATTAGCCCTTTTAGGAACATCAGTCAAAACTGA10.7874015748031495No Hit
AATCCTTTTCTCCTAGTATTGTCAAAGAGCAACAACCCAAAGCGGCAAAA10.7874015748031495No Hit
GATAATCCGGTAAGCCAAATCTTAAGTTGAGACGTAGCACAGGAATTAGG10.7874015748031495No Hit
TGCAAAAGGATGGTGAACTTTGTGGATCAGTTCCTGTTTCTGTCATTGCT10.7874015748031495No Hit
AGAAAATCAACTTCAAAAAAACCAATCTCTTCACAAAATCCATAAACATA10.7874015748031495No Hit
ATACAACGTCATCATGGGAACACCATGGCTGCACAGTATGAGAGCAGTAG10.7874015748031495No Hit
GACATGAATAGAAAAGGAACGGTTCGGGTAGGATCGACTAACATCACCGA10.7874015748031495No Hit
CGGATAAAACATATCACCATCTCATCCCTGCATTCTCACATGCTTTATGA10.7874015748031495No Hit
ATATAACTACAGTGTATACAAAAAGTTTGAGAGTAAGCATTACACAATCT10.7874015748031495No Hit
GTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGCGTTAGC10.7874015748031495No Hit
ATTACCTCTCTTCCTCTTCGCAAGCTCAGAAAACAGAAAAGAAAGAAAAA10.7874015748031495No Hit
CCCAGAAGTGAGGACTTAAGAGTGTATAATTTTCGAGTTATGTTGGGAGT10.7874015748031495No Hit
CTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGA10.7874015748031495No Hit
GTTATCTGGTTGGCTCTGATAGAAACACACCAAAATATTTTAGAGTGGAT10.7874015748031495No Hit
AACCTCAGCCATCTATCCATTATACAAACCAGCAGCTAACTTCTTCCACT10.7874015748031495No Hit
GTTTTAGCTAATGTAATAAAGATACCAATTGTTGTTCCAAAAATTTGATC10.7874015748031495No Hit
CCATCCTTCTTCTCATGATATCAGCAGCAAATAAGTGAGGCAAGAGTTGT10.7874015748031495No Hit
GGTACATGCTCCTTATCCTTGGCCATGCTCATATCATCCCCTCCCTCTTG10.7874015748031495No Hit
ACATAAAATAGTTTATAATTTAAATACTTCCATTTTTGTTTACAGCCCAC10.7874015748031495No Hit
CACATACATCCACTTATAACTTAATCATAGTTTAATTTTCTGTTAATTAT10.7874015748031495No Hit
AAGTAATAACTATGCACACACAGCCACACAGGTTTATGTCTCGTCGTTCT10.7874015748031495No Hit
ATCTCATATTATTCTCATAATACTACTTGTAATAACTCTTCATGAGTTTC10.7874015748031495No Hit
AATCAGGGTATGCTAATCTTAGCGTCTCCAAGCTAACTTATTTCATATAT10.7874015748031495No Hit
GTGTTTAAGATATTTTTGCACATGTTAAAGAAAATATTACTAGATTTTTT10.7874015748031495No Hit
CAAAATAACAGGGGTCAAGGTCGGCAAGTGAGACGGTGGGGGATAAGCTT10.7874015748031495No Hit
AACACAGTGATGATCAAACTGAAGAACACATCGATCACAATCATGACAAT10.7874015748031495No Hit
GTTCTGTATAATTATTTATATGTCAGATAAAATAAATTTGTTTGGGCTTG10.7874015748031495No Hit
CCCTGGCTGTTATTACAGGATCATGGAGGCTCATGAGAAGATTGGTGATA10.7874015748031495No Hit
CAACGAGAGTTGGATGAGATAGCATATTAGTGTTACGAGTTTAAGAACCG10.7874015748031495No Hit
GTTCTCAACAACAATAAAACAAACGAAACAATTAAAATCAAAACCATCCA10.7874015748031495No Hit
GATGGTGGGGTCTGGTCCAGTGTGGGCTATTCAGCTACTGATAAAGATGG10.7874015748031495No Hit
ATCCAGAACTTCACATGCAATTTACTAAGCTGCTGGTTTTAGCTGCATTA10.7874015748031495No Hit
GTTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAAT10.7874015748031495No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)