FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_077.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_077.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAAGATCTAAGAGGATGAGTTGAATCTAAAAATGAATCTGATCTAAGA111.11111111111111No Hit
GGTCTTGAGCGACCGATCCGGCAGAACAACTCAAAAGATAAAGAAGTATC111.11111111111111No Hit
GTTAAAATCATTAGGATAGTGTTTTGTTTTGATAAATAAGTTAAAGAGAA111.11111111111111No Hit
ACTTAACAAACACAACCTACTTAAAGGCTAATCCTTTGACGATAGATATC111.11111111111111No Hit
GCTATAGAGGGAGGAAAGAGGGACCACACGCATGGGCTGTCGGCTGGCTT111.11111111111111No Hit
GCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCAC111.11111111111111No Hit
AAAATAAACAAAAGCATTCACAGATAATAAAAAATAAAAATANCACCTCA111.11111111111111No Hit
AGGAAAGCTTTGTGAGACCCCGAAGCATTTCCATGTGCATCAGCGTCGCC111.11111111111111No Hit
GTTAAGAGTCTGATATCGTAAGCAGCGTCATATTAACTCAATAAAAACTG111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)