FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_073.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_073.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATATATCATCGTCACTGTTTTATTTACTTTTCTTGTCACTCTCATCTT23.0303030303030303No Hit
ACATCTACAAATCTACTGAATCTTGGGGTGGTCTTTGATAAGCTCATCTT23.0303030303030303No Hit
CCTATATTAAGCTCACTAGTCTTTTCTAAACGGCAAATCAGCTTCATCCC11.5151515151515151No Hit
CAGTAGGGATCTCCATGTTCCCTATTCTCACTAGGACATTGTCTAGCTAG11.5151515151515151No Hit
ATCTATGTAGATCTGATGCTGAGTTTTCTGTTTCACAGCCAATTACATTC11.5151515151515151No Hit
CCTCAATTCTTCTGTTTGTTTGTTTGATCTAAAAAAGGAATAGAATTAAA11.5151515151515151No Hit
GGTAAATATTGTATAATTGCTCGGTTTTCTGCAATTTTTTCCATTCCTCT11.5151515151515151No Hit
AGATATATTTTTCTCGAAATCTCCAACTTCGGAAGAAAAAGAAGTAGACT11.5151515151515151No Hit
ACGCAGAAGATGCAAATTTCAAGAAGTTTCAGTACGCTGAGATTGACCGA11.5151515151515151No Hit
CAATGCGAAGGAGCAGAGAGTTTGCTTCTAGGCAACACGACTAACAGCTC11.5151515151515151No Hit
CTCTCGTTCTTTAAATAAANCAAGCTTGGGTTAAGATAAAGGGCTAAAAT11.5151515151515151No Hit
GATGTAAGCAATGTCTAAGAGAATTACAGCTTGTAAGTCTTGCAAATAAA11.5151515151515151No Hit
GATCTAGGCCATTGAGGCTATGAATCCGAAAGGAAAAAAAAGATTCGTGA11.5151515151515151No Hit
GTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAGGTGGT11.5151515151515151No Hit
ATCCATAATTTTTTTGTCAAAATAAAATATCTGCAAATTTTCCACATAAA11.5151515151515151No Hit
CCCCAAGCCAGAGCCCAAGCCCGGCCCGGCTCGGCTCGGCACAGCACGGT11.5151515151515151No Hit
ATGCTTCCTATGATAACCGGATTCATGAATTATGGTCAACAAACCCTACG11.5151515151515151No Hit
CCGCCACAATGCTCTGGCTCAAGCTCATATAGCCGCTTTCCTGCCACCAG11.5151515151515151No Hit
ACATTAACATTAGCACCGGAATCACATAGAGAGTTAGCGAATTCAATGCC11.5151515151515151No Hit
ATTCAAAGATCAGCCCTTTGGCTCTGTGTTTTCACATCGAGAATGCTTTG11.5151515151515151No Hit
CATAAAGAGTTAAGTTAATATGATTTAGCATTACGAATCAAACAATCGGC11.5151515151515151No Hit
CTTAAACATCCACTACATGTTGTTCCTATTCTGTGGTTTGTAAAGATAAG11.5151515151515151No Hit
TCTAAAGATGATCTTCAATTACAGACTCAATTCAACTCCATGAACATCTC11.5151515151515151No Hit
GATAAAAAGCATTTAGGGTTTTGTCGTTGGGTTGAAGTTCCAATTACTTG11.5151515151515151No Hit
ATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCT11.5151515151515151No Hit
AACCTATGTTATTGCCTGCGATAGGTGAGTAATAGGATTCGTGGATTTCA11.5151515151515151No Hit
AAGTAAGATTCTTTCTCGGCNTATACCTATGAATTTAGCTTACATCAAGA11.5151515151515151No Hit
GTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGT11.5151515151515151No Hit
AGATTAAACAGCCCATTGCTCCAGATAAGAACACGAGCCATGGCCATTTT11.5151515151515151No Hit
GTATGATGAGTAGCGTCGATTATAAAGAGACAACGTCAATTAGTACTCGT11.5151515151515151No Hit
CCATAGGAATGATAGGTCATTATCGCGAGAATCTTNTGCTGTCAAAATAA11.5151515151515151No Hit
AGCATCAAAGACATCCTCACCAGACGTAACACCACGGATGTACAGAGAAA11.5151515151515151No Hit
CTCTTTTTTTGTTCCTCTAAATTATATACTTTTGTTTCTCTTTTCATAAG11.5151515151515151No Hit
ACTCTAGACTCAATAAAACATTTAAAAACAATAGTAAAATCAAGTGAAAA11.5151515151515151No Hit
GGAATTAACCATTTAGAATTACAAAGGAAGAGAGTATCCACGAAGATAAG11.5151515151515151No Hit
GGTGATATGTGCTTTATAATATAAAAGATGTGTGACTAATTAAATTAACA11.5151515151515151No Hit
GGAACTTGATCTCTGCTCCAGGTGATGAGAATTAAGCCAGCGCTTATGCT11.5151515151515151No Hit
GTTTCGTACCTTGCTAAAAAATCTATCCTTGTTTACCAACCACACATTGT11.5151515151515151No Hit
CCCTATGGATAGTACAGAGAATGGGATCTGTCATTTTTATCAAGATGGTT11.5151515151515151No Hit
AGATCCAACCCTAAAAAAGGTATTCCAGTTGAATGCATTGAGTCTCAAAG11.5151515151515151No Hit
TCTTTACCTAGACTAACACCAAGCTCAAATGCAACTCTCTTGGCAGTGGC11.5151515151515151No Hit
CACGTGAGTGTCCCAGTCAGATACTCTTTTTTACATCTGCTCTGTTTTGG11.5151515151515151No Hit
ATGATAGTGCGGGTATGATATGTTTACAAAATTCCTAAACCAACTCGTTG11.5151515151515151No Hit
ATATATATGATTACAGTATCTTAGACGTAGAGAGAGCAAAGTTGATGCAG11.5151515151515151No Hit
GTGTATCATTAGGCAGTGCAAGAAAGCTGAGGAAGACAATTTTTTTGTCG11.5151515151515151No Hit
AATTTGAGTAAAGTTTTTTTTTTTCTTCGGTTTCTTGTTGCGTATAAAAC11.5151515151515151No Hit
TCATAGATTGATATCTTTTAGAATTTACTTGAAGAATCCTAGATTATTAG11.5151515151515151No Hit
GTCCGAAGCCTTTTCGCTTGTTGAGGTTCCCAACCGGTTCTCAAGGGCTT11.5151515151515151No Hit
GAAGTTATGTTTTGTGTTATTTTGGCCGATTTTAGTGTCTTTTCAGGTTT11.5151515151515151No Hit
ACATATAGTATTGTGTAGGACTAGTTGTGTTGTATATATAGAAAATAGAG11.5151515151515151No Hit
ATCGAGACCCTGACATGTTAGTGAAGACATTGAGACGTCTGAGAAGAAGA11.5151515151515151No Hit
ATGGCCGAGGGGTTGATGGGTCCGGTCTTGANAACCGGTATAGTTCATAA11.5151515151515151No Hit
AAGAACTTCAATATAATAATACTCAACAGAAATCAGATTGTCAACCGCAT11.5151515151515151No Hit
ATGTAACCCCTATGCCACATAATGGTTGTAGACCCCCTAAAAAAAGACGT11.5151515151515151No Hit
GGATGCGGGACCCATCACGAATGGACTGCGGGAGCCCACCAAAATAAAGA11.5151515151515151No Hit
ATAAATAGCTTCGGAACAAGATAAGAAACGGAATCTCCAACGCATAAATG11.5151515151515151No Hit
TAATTTATTTAAAAGTTTTTATTTCAAAACATAATCTACCTCGAAAACAA11.5151515151515151No Hit
GTTTATTGTATCTCTAAAATTTTGCACCCCTTTCTAATGTTAATAACTAG11.5151515151515151No Hit
GGAGAATCAATGNCCGACCTGTATAGCCTGATTCAAAAGAGGGGGAAAAA11.5151515151515151No Hit
AACCAAATATTGTCACCATAAATGAAAACAAAAATTGAGATAGAGCACAA11.5151515151515151No Hit
CTTATATGAAGGCTATTTTATCAAGCTATAATTTATCTCTTGTGGAAGTA11.5151515151515151No Hit
GAGTTTGCTGAGCTTCTTGTGGATCAATATCACTATTCTTCTCTGCATCA11.5151515151515151No Hit
GTAGCAGCACCATCCGCTAAAATTTGTCCTTTTTTAATGCATTTACCCCG11.5151515151515151No Hit
GCTTTGTAATCTTATGTTTGGTTTGATCTTCATTGGTGGAGTTGCGGGGG11.5151515151515151No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)