FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_071.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_071.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGTATGGTGAGGCTGAAAAACATGACGTGCCTGACTACCAATGCTTCA21.8691588785046727No Hit
CTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATGAAAA21.8691588785046727No Hit
CATATTAGGATATTCATAATGTTCTTCATCTAGATTTGAATCTATACTAG10.9345794392523363No Hit
AAGACAGCCAAGGCATCAACCTAAGCCTAGAGAGACAAAATACAGAGTTT10.9345794392523363No Hit
TATTTACTCTTTAATGAATGCTATTTTTAGACTAAATATAGAGTAATGAT10.9345794392523363No Hit
GTGTCTTGTTAACTAATTTTTCTTTGTTTTTATTTTGTCTCAGGAACTAG10.9345794392523363No Hit
ATTCTTAAAGCTTGTCCAATAGCTTNGCTCTGGCAAAGTCGGGTATGCTG10.9345794392523363No Hit
CTCTATCATAACAGAACAAAAATAAGCAGCTTTATTATTTCAGCCTGAAA10.9345794392523363No Hit
ACTCCGAGATGTTTTGTCATTCTTACTGAACTGAGCTGTTCTGGAGATCC10.9345794392523363No Hit
AAGATGAGATGAATTTATATATTAGTCTATTGGCTTATGTTGTGGTTTGG10.9345794392523363No Hit
GTACGAGACTCAGAACTTTAGTCCTGGGTTTGTAACGGTATCGGAAGGGC10.9345794392523363No Hit
CACGTAATATTTCTTTTCTTTTTTTGGGACTCAGCACATAGTAATGCCGA10.9345794392523363No Hit
CAATTCAAACATTTCATTTTTTTATGAAAGACTCGACTATATATCTTATT10.9345794392523363No Hit
CCAAAATGGTAACACTTGTTCACAAGATCTTGCACAAATAGCTAGTTACT10.9345794392523363No Hit
GGTATCGTGTTCATACTGTTGTATTGAATGATCCCGGTCGTTTGGTTTCT10.9345794392523363No Hit
ATTTAGAAGGTGGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT10.9345794392523363No Hit
AGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAATTCGTT10.9345794392523363No Hit
CGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTTGCATCAA10.9345794392523363No Hit
GTGTTCTGTAACATAAGCCAATATCTCTGCATTGGAAGATTCTCAGCGAC10.9345794392523363No Hit
CCGTTCCATGCCTCATTTCATAGGGAACCTCAAAGCGGCTCTATTTCATT10.9345794392523363No Hit
ACATTGAACACAGTCTTTTATTTATTGCACTTTCAAACTTCAAAGAGTGA10.9345794392523363No Hit
CGATGACGTTAACCGCGAAGACCGCAACACCTCCTGATCTCACCTTTCCC10.9345794392523363No Hit
GATCAAGACTTTGATTCACATGAAGTTATGAGCATCTATGTCAATGACAT10.9345794392523363No Hit
GTCCTATCCTGCTCCTTACCAGACAGTACCACTCCACCAACCGTGGTCGA10.9345794392523363No Hit
GGTATTCGGGTTCGATTACTTTTGATAATTGATAGTAGTATGCTTGCTGT10.9345794392523363No Hit
ATACTAATGGCACACAAGTTCAGAAGAAACGGTCTTCCTTTCTGGAACAA10.9345794392523363No Hit
GAATTTAACTCAACTTTATATAATAAGATTCCTTTAATTTTTTTTAATAT10.9345794392523363No Hit
ACCTTAACGGAACCAATAGATTTGTGTATTGGATTAAAAATTGAGAGGAA10.9345794392523363No Hit
ACATCTCATGCAACACCTGCAACAATAAACTAGGCAAAAATAATCTCACA10.9345794392523363No Hit
CATTTCTAACAGCTAAACTACTCGTTTTTTTTGTATTTTAGTTATTGAAG10.9345794392523363No Hit
AGTCTATTCAAGTCGAGAAGAGTTCATAACAAGTGAATAGGTGGAGTCGG10.9345794392523363No Hit
ACCCAAGAGATTCCAGATTATCCCATCCACTATGCTCTGTGTATGAGACT10.9345794392523363No Hit
GTTCCGCCGAGCGGATTACTCAATCGCGTGGTCAGCACCAGTGCCTTGAT10.9345794392523363No Hit
GCTGTTTTCTTCTTGTTCAAATACCTTTTAGAAAAGAGAGAAGAGGTATT10.9345794392523363No Hit
GTACATAGCGTGTCGTATACTTAGAGGTGTACGGAATGTGTTGTACATTT10.9345794392523363No Hit
GCATGAATAAATTGCTCCGATGACTCCATGATATCCACACTCCCCACACT10.9345794392523363No Hit
TGGTAATATACTAATATGGTATCAACCGACTATACTGCAATCGACACTAG10.9345794392523363No Hit
TACTATCCTCTTTCTATGGTCATTCTTCTGTTAACAAATCCCGTTTCCCT10.9345794392523363No Hit
GATTCCAAGTACCCGGATCAATCGAAAGCTCTATTCTCTCTGAACTACTC10.9345794392523363No Hit
CATATACAGTAAAGATAAAATTATATTGATTAGTCATCAAATAGTATTGG10.9345794392523363No Hit
AAATAAATGTATTACCTATAAAAATATAGATATAAAAGAATACCCAAAAA10.9345794392523363No Hit
GACTCATGTAGTTTTCTTTACCAAAAAACAAAAAAAACAGACTCATGTGG10.9345794392523363No Hit
GAGTTATACTGTTTTAAATTGAAAATATAGATTGAGAGTTGATTATAGTG10.9345794392523363No Hit
AAATTACTGTGCGTTTTTTATTACTCAACCACTAGTTATCAAAGATTATT10.9345794392523363No Hit
GCATAAAAACATGGCAGTCATGACTCTTCATGCCTTAAAACTTTCCATTT10.9345794392523363No Hit
ACTGGATTCTTATTCATTGAAACTTTGGAAACATGTACATCTTTTTTCTT10.9345794392523363No Hit
CCCATAGACAAAACATGACAGGGTAGCAGCTAGCAAAACAACAGTATTAT10.9345794392523363No Hit
CATATGACCTATTCATACAAATATGGATGAATGTAAGAACAAATAGTACA10.9345794392523363No Hit
TAATTACACTAGTCTTAGGATTGATCACCTTAATACTGGTACCATAGGAT10.9345794392523363No Hit
ACTGTCGTAGTGGCTCTCTCCGGGAACATTCTTCTTACAATGATTACACC10.9345794392523363No Hit
GTAGTAGTTGTTGACAAAATCATTGCCTCCTAGTGTAATAAGGACAAGTG10.9345794392523363No Hit
CCATAAATCCGCTAAGACCCTATGGTAGCATATAATGAGCAAGTTTGATA10.9345794392523363No Hit
GGTCTTGTCTTGTCTCTTTTTCCTTCACTTGTTAGTTAATGTCACAAAAA10.9345794392523363No Hit
GTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTGAGGGGGAAGCAACCGC10.9345794392523363No Hit
GAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGA10.9345794392523363No Hit
GGTGGGGCGCTTGCTCTCCACTGGCGGTTGGATGAAAGACGTACCCATAA10.9345794392523363No Hit
ATTCAAAACTTTATAAGTTTTTGATGTCAAGGAAATAACGGAAAAAAAAG10.9345794392523363No Hit
CCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGACA10.9345794392523363No Hit
CTTCATTCCTAGGCTCGATACACTAGACCTATAGCTTAGAGTGAAGCCTC10.9345794392523363No Hit
ATTTTCATCTTGTTAGTGTTGCAGCTACAAAGAGTCCTGTGATATTCATT10.9345794392523363No Hit
GGTATTAACTTATTATGTTAAGGTAATTATGTCTTTTGATTGTTATGTTT10.9345794392523363No Hit
GAATAAGCATTAAGAACTCTCACCCAAAAATGNTTTAAAGCATTTAGGAA10.9345794392523363No Hit
GAAACAGAGGTGTTTTTGACTAATAAAGGCACCACTATGGAGATTCAAAC10.9345794392523363No Hit
ACACAAAAATTGTTGATACCCAACACACAAACACACAAAATCGATTCAAT10.9345794392523363No Hit
CTACCTTTCTCTTCCGATCTTTCAAAAAATTCACCTGTTTTTGAAAATTA10.9345794392523363No Hit
GATGATGAGTTATGTTATGATCTCGATTGCTGAGCATGCCAGATTGCTTC10.9345794392523363No Hit
TTAATATGGTTTGGTTTTTTTTAGTTTATTTTTTAACGGTTTTAACCATA10.9345794392523363No Hit
CCTATGATCCATATTGTCTCTCTTGCTTGCTTGTTTAGTTCTGTTCTATT10.9345794392523363No Hit
TATAAACGGCGTGATGTTTACTGGGTTGGGTTGGGTCAGTCTCACTTCGT10.9345794392523363No Hit
CCCCAACATTGTATCATAAGTCAGCCGTCATATACACAATAAGTCAGCCA10.9345794392523363No Hit
GGTATATTCAAACACTCTTGTCCATCGGAGTTTCTCTTGGTCTTAACCAG10.9345794392523363No Hit
TTAAAGGCTTGAGATGTGAATTCACCAGCATTATCAAGACAATTTTTCTT10.9345794392523363No Hit
ATTAGATTCCCAAACTTTCTCTTAGCCCGAGTCCTCCGAGGTTGGTACTT10.9345794392523363No Hit
CTTGATGTCCTGCCCAAGAAAGGGACCCAAGTCCTAGTAGCCCTGCTAAA10.9345794392523363No Hit
ATGCCTAGGTCGACCTGTGTTTCTTGGGTGAGTGGATCGCAGAGGTGGTG10.9345794392523363No Hit
GTACGAAAGGAAAACTAGTTGGTTTGACTGTCATCGTTGGTTCATCCCAA10.9345794392523363No Hit
ATTTGCCACAAGAAGTCCCAGCAAGGTGGAAGCCAGAACTCAGCGCCTTC10.9345794392523363No Hit
GTTTTTCTTTGACAATAAATCTGACATTTTAACTGAGTTTGTACTTATAT10.9345794392523363No Hit
ATATTAAGCTTGCTTGTTTCATGGTAAAGTTAAAAACGGCGGCGTTTCTC10.9345794392523363No Hit
ATATTTGATACCGGTTTGTGTCGTAGGACGGGACTCCATAACCGGAATAC10.9345794392523363No Hit
AGGAGTATATATACAGAGAGTGGAGAATATACCTCAATCTCAGTTGCCTT10.9345794392523363No Hit
ATATTACTATATCTCTAGAGTCAATGATTTTATATGAGGAACTACTGAAC10.9345794392523363No Hit
ATCGATGACGGTCCTTCACACATGGACGTCGTAATCACTCCTTCACTAGA10.9345794392523363No Hit
GTTTACTTTTTTTTTAGTGAGGAAAATAGCTTAATTAAAATCATTGAAAC10.9345794392523363No Hit
ACAATCCAAAATTAAAACGCAAGAAATTAGAAAGAACAGTCCCAACCACA10.9345794392523363No Hit
GGGTTTAGCAGGATATTACAAGTGGTTCGTAAAAAACTTTGATGCCATTG10.9345794392523363No Hit
CTGTCTTAGCATACAGAAGTAAACAAACCAGATAAGATAACATCTTCAAG10.9345794392523363No Hit
ACATAGTACCTCATCCCTCCGCTTATATTCGCTGTTTCCATCTACACATT10.9345794392523363No Hit
AACACGAGCAACAAAATACTGAACCTGATGAGTTCTAAATTTCAATGCAG10.9345794392523363No Hit
ACATGTAATAATGACTGATTATTTAAAACATCCTTCTTCTTTTTTGGGGA10.9345794392523363No Hit
ATACTAAGTAAGATGCGTATGGTATGGTAAAGTCTTACTGGATTTTTTGA10.9345794392523363No Hit
ATTTATACTAAACCCTAGAAACCCTAGGGTTGGAAATCCCCAACCGAATC10.9345794392523363No Hit
GCATTGAGACACTGACATGTGTCGCATGCTAACCCATTTTTTTCTTTCCT10.9345794392523363No Hit
CCTCTTCTACACCATGACACATCATTGATCAGATCACGTCACCAATCCGA10.9345794392523363No Hit
GATCATCAAAATTAAGTCATTTATAAATATAATAACACCATATTTTAATT10.9345794392523363No Hit
TAATTCTACTACCTTCAAAATCATTTAATTTAAGAAACAACCAGATAACC10.9345794392523363No Hit
TTTAAATTGAGATTAGTACTCCATTGCTCTCTGCTTCAAGAGCTTTTGCT10.9345794392523363No Hit
CCAAATTACAACGTTAAATATATAATTGCATTCTTGTAAAAGTTGTATGA10.9345794392523363No Hit
TACAAAAGTATAATGATTGTAATTTTCATACTCTTTCTACCTTCTTTACT10.9345794392523363No Hit
ATCTTTTATGTAGAGAAAACAAGTGTAAGAGAAGCAAAAGAACAAGCTTA10.9345794392523363No Hit
ATACATTTCTACACCAATCAACTCTCGTACATAGGACAGAACTTAGATTT10.9345794392523363No Hit
GCATTGGTCCGGATAAACCCCAATTTATTGCTTCTTCCCCACCAATAATC10.9345794392523363No Hit
TTGATCCACAAGCAAGTCAAAGTTAGGCTCGGGAAGAGGAGGAGAGTCCG10.9345794392523363No Hit
CTTTGTTATTAGCGTCTTCGTTATACGACCTGATTTCATCATGAACTTCA10.9345794392523363No Hit
GTTAAAGACAGTCCTTCGCGTAAATTGCTTTGAATAGGTAAATCAATCAT10.9345794392523363No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)