FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_058.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_058.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2666
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCTAAAGAAATCGAACAGAGAAGAAAAGAAGAATTTTGAACCTTGAAG30.11252813203300824No Hit
ATTAATCATTGTGAGACTGCAAAGGCGATAAAACTGATCCAAGTGTGCGA30.11252813203300824No Hit
GAATTTGAATGTGTAATTTATGGAATGGGAGGGGTCATCTCATTTTTTGA30.11252813203300824No Hit
GAACACATAACAACTCAAGACAGAACAGAACAAAAACAGTATATAACAAT30.11252813203300824No Hit
GATGCAAGGCTATTTTCAAGCTCAAAGAGATCCTAGAATATACATATACA30.11252813203300824No Hit
AGATTGTTGTAAGTGAATGCAACACGAGTATAAATGAGAACGGATAGAGA30.11252813203300824No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)