FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_056.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_056.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGACCAAATCATTGCTAAATGTAGGCATATAAAAGGCACTAGATTCATT11.0204081632653061No Hit
CTATTTAAGTCCAAGTGTTGACAAAACACACAGATGAGAGATCATCCCAA11.0204081632653061No Hit
AAACTAAGCAATAAATTAAATAAATTAAATGACAACAAATGATATCATGC11.0204081632653061No Hit
CACTTCGATTCGCGAGGTCTCGATACGACGGCCGTGGGCGGCCTTACTAC11.0204081632653061No Hit
GTCCCACTGGGCATGAATGATATTTGTTTGATGCATTTGGTTTTGCATTC11.0204081632653061No Hit
ATATAAATCGAGGATTAGAACCAGAAATGAAATCCCAGTTTTAGGAAAAG11.0204081632653061No Hit
CAAGTCTACCCTACTTAGAACTCAGGCCAAAACAAGCCTTTTGTGCCACA11.0204081632653061No Hit
CTGCTGCAGAGAGTAGCGACCTTTGAGGAGTTGGAGAAGAGGAAGACGAT11.0204081632653061No Hit
ATTCACTCCCTTTTTGAAGGCTAGAAATTTTTTTGTCTTGCCACTTGCAT11.0204081632653061No Hit
GTTAAGTGTAGATGCGTTTGATAGATTCAGAGGTGAAGATGGGAAGTTCA11.0204081632653061No Hit
CTATCTTTCAAGATACATGAGGACCCACTTATGATTCACTACCAGCAAGC11.0204081632653061No Hit
GCTCCCAAATTTCATTGATGCCATTATAGAGTATAGAAGATACAAGAAAG11.0204081632653061No Hit
GATATCTTCAGTGCCAAGGGCGGAGATCTTTTGAGGCAGTTTATTGATTT11.0204081632653061No Hit
GGCATATCATCATCATGTAAAAAATCAGTATCAAAATGGCTCAAAACTCA11.0204081632653061No Hit
CATCTTCCACAACCTCAAGAACACTTCAGGATCAGGGATATGCACGAAAA11.0204081632653061No Hit
GAGTTGAAGTTGATTGATCCTTGCGGTTATGATTTTGGATATAATTGATG11.0204081632653061No Hit
TAGCGGATTTATGCTAAGATAATATTCTCATTTGAGAGGTGGTTTATTTG11.0204081632653061No Hit
CTCTAATCTTAAAAAAGAGCATATTCATTAGGGAAGACTCATTTTATCTT11.0204081632653061No Hit
GGTTGGTAAAGGATAGAACCTCAAACAATCTAAAAGAGAATACAAAATAT11.0204081632653061No Hit
CTATATAAGAACAGAATAAAATATTTAAATTAAATATCAAAACCAAAAAT11.0204081632653061No Hit
CGTTACCCTGCCATAATGTGATGTGTTTCCAATGCCAATAAAAAGTAACC11.0204081632653061No Hit
GGCAATATAATGCAGCTAGCAGCGGTGGCAGCATTGTGTGTGCAATACGA11.0204081632653061No Hit
GACCATTACAGAGATGGGTATAATAGGGGTTGGGGGGGTGTTTCAGGACA11.0204081632653061No Hit
GAAATCCATTGTCATTCTTTGCAATTTTCTCATGACTTTATTTAGAGGAA11.0204081632653061No Hit
AACTACTCCTGAATGATATTTTAGAGAATTTGTATGAATGCCATAATATC11.0204081632653061No Hit
TTGCAATGGTCAATAAATCAAAATGACGAAACTACACTTTTCAAATACTT11.0204081632653061No Hit
GTAAAGGATGAGATGAATTACGAAGCACTTTTTTATTCTTAGAATGTGAG11.0204081632653061No Hit
GAAATGGGCTATTCGGAACAGTTTTGGGAGACGTGGTTGCTTCCCCTCCT11.0204081632653061No Hit
ACCTCATTGTCACTTCATCCCTCTCCTTTCAGTCGAGTCACTTCGTACCT11.0204081632653061No Hit
AAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGG11.0204081632653061No Hit
AATTAGGGTAAGTTACAAGTTTGCGATTTCATTCTTTTTCTGCTTGCAAT11.0204081632653061No Hit
GCTATATGCTGTTTATTATCAATGATTTCCACAGAGGGCGGTNAAACGAT11.0204081632653061No Hit
CTATCAAAGTTTATGAGCCTAATCTCCGACACCTATGTGGATCTCACTAA11.0204081632653061No Hit
CCTTTAATCAAAACCCTAACTATATTATTTAAAATGTCAAAAATGCAAAT11.0204081632653061No Hit
TTTCTATCCATTGTTNATGTATGAATAATGACTTGAACACCGTAAAATTT11.0204081632653061No Hit
ATTTGTACCAGATGCTCTGAGGAACAAGCTAGAACCAAAGAGTACAAAGT11.0204081632653061No Hit
GTACTCAATTGTTTTGGTCTCTTTCTCCCATGACTTCCATTTCTTCATCT11.0204081632653061No Hit
ATATAAAACTATATGATATGGATAAATAAAATGATATTTGTTCATTCAAC11.0204081632653061No Hit
GTTCATACCCTCTATTATCGAATCTCAGAATAAACCTCGAAAATGACTTG11.0204081632653061No Hit
GAACTAGAGACCTGGTGCTTGGCAGAAATTTGTGATAGCCTAGCTTTCCG11.0204081632653061No Hit
AGATAAAATATTTAAAGCCCTAAGAGGAGAAATTGCCCTAAAAGTGTAGG11.0204081632653061No Hit
GTATAATGGTAAGGTTTAGTGTAACATGTCGAACCAATCAAGAGTGTGTC11.0204081632653061No Hit
AATATGATTAAATGTAATATGAAAAAGGAAACTCAAAAAAATGATCGCAT11.0204081632653061No Hit
ATCAACCTACTTAGAGGTATGTGTCATATAGGCGACCTCCACTATGACAT11.0204081632653061No Hit
GTTTGCTATTGCTAGAAGGGCTGCTCGCCTTAATACGGCTTGGCTTCGCT11.0204081632653061No Hit
CTTATACATTGTTGCTATACTCCCATATCTTTCCCGCCTCCTTCAGGTAC11.0204081632653061No Hit
CCACCATCCTTCGTTGTACCAAGCATCCACATCTTCATCCAATTCATATC11.0204081632653061No Hit
GTCTAAGAATTGGATCTAAAGATCTTGTTTTATGGATTTGATGCAGATAG11.0204081632653061No Hit
GTCCAATAAATGTCAATATAAAATGGAAACCAAGAAAATTGTAATAAAAT11.0204081632653061No Hit
TAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATT11.0204081632653061No Hit
CCACTATACTACCGCGCACAACCGTGCATTTGCGGGAACTCTTGGTTTGG11.0204081632653061No Hit
AAATAACCAAGTGCAGGAAATTCTCTTCCAGGCTTACAGATAAGAAGTAA11.0204081632653061No Hit
ATATATATTTGTTCCTAATTCTCTCTTGCAGTTTTCTTCCTCTGAGTGCT11.0204081632653061No Hit
AATAAGTAGCATAAAAAATTTTATAGATTGAAATTTGCATATATAATAGG11.0204081632653061No Hit
GTACACGCTATCTTTCCATTGGACCAGTCTTTCAGTAATCTCGAGAGTTT11.0204081632653061No Hit
GGTTAGGGATTGTTTGCAATTTTAACAAACTCCTGAAATTGATCTCAGTC11.0204081632653061No Hit
ATTCTGGTCCGGTATGGAATGAACTTATAATCATGGAATCTACTCGATCA11.0204081632653061No Hit
GTCACAAAGAATGAAGGACTTTAGTTTCCTATCCTACCGGTGGAATTGGC11.0204081632653061No Hit
ATATAATGTAATACAATAAATAAAAAATAAAGAAGAAAGAAGGAGGATTT11.0204081632653061No Hit
TGACAGATCAATGTTATGAGCAGGTTCTTCTTCTGAAGTTTCAAAATCGA11.0204081632653061No Hit
CTGTACTACACTGGAAAATTAACTATTTCATGACATTTGAATAAAAAAAG11.0204081632653061No Hit
GAGCTGAGATCCCTATGTTGCGAAGCTTGTCCATGGATTCTTTCCACCAT11.0204081632653061No Hit
CTGTAAGCAACAATGGAATGGAAGTGGCTCGTGCATCCAAAATGTAGATG11.0204081632653061No Hit
CCTTGAATGCATCGATGAATGGCTCCGATCTCACCCAAACTGTCCGTTAT11.0204081632653061No Hit
GTTTATGATTCTCCGCACCTTTGCTCCAGTCATAACAAACCTATTATAAA11.0204081632653061No Hit
TCCCTGACCTGTAACAAGAAAAATAATTACAACTAGAAACTAGCCAAGAG11.0204081632653061No Hit
ATATATATGTTTCACTATCTCTGATTTTAGAATCTAATGAGTTTTGAGAT11.0204081632653061No Hit
AAAATAGTTTGAATATTTAAAGTGCTAGAGTAATGTTATCAAAGTTTAAT11.0204081632653061No Hit
GGGTAGTGAGTGCCCACTTGAGTAGGCAGGTTGAGTGGGCTGTCTTCTCT11.0204081632653061No Hit
GATCATAGCACCTGAACTTGGTGTGTCTGTGGGGTTTATAGAGTACGGTG11.0204081632653061No Hit
GAGGCGAACATGGTGACCATGGCTTTTTAAACACAGGTTCGTCCCTGTTT11.0204081632653061No Hit
ATGATAATCATTATTCTGAACATGGATGATACAATAAGGCTGTTGATTGT11.0204081632653061No Hit
CCCAATCGTTGATGCCAAACTGAAGAAGAATTTGAACGGAGTAAGGCTTG11.0204081632653061No Hit
AAATAATTGAAAATAATATCAAATAAAAATGATGAGAGAATCATAATTCA11.0204081632653061No Hit
TCTGTCAAGTTTGCGATTAAACCCTTTAGTGGTACGCAGTCAAATGCTAG11.0204081632653061No Hit
ATACAAAGAACAAACCAGGCTTGGGTAGCTGAGTGATGATGCCTACCGAT11.0204081632653061No Hit
TTTATATGTTTTGTGTAATTTTAATGTGCTAATATTTTTTGTTTCTTTAC11.0204081632653061No Hit
TCTAGGGACTGTCCCCCTGAAAGCTTTACCGAGTCAGACATGATGAAATT11.0204081632653061No Hit
CATAAACTAAGTGATCAATTCCATTCAAGCAATAAGATCAAAAATAGATG11.0204081632653061No Hit
AGACGGATGTGGCTGGACAAGTTAAGACAGGTTTGCCAACTATATCACTC11.0204081632653061No Hit
TAAATATATCAAACATAAAAAAAAAAAAAAACATAAACAACAACAAATCT11.0204081632653061No Hit
AACTATGACACAATCAAATCCGAACGAACAAAGTGTTGAATTAAATCGTA11.0204081632653061No Hit
ACTATTGATTATAACTTGTTTCAGCAATTTGGTGATGATGGTGATGATGG11.0204081632653061No Hit
ATAGTAGATTTATCTTGCTAGCTATTTAACTGGCAAAAGTCAGAATCTAA11.0204081632653061No Hit
TAATTGTTAGTACTCGGTACTTGGTAGTAGGGATGTTGCGGTAAATTTTT11.0204081632653061No Hit
AGGTTTGCAAAAGCAAACATGCAATCCTACCAATGCCAATTATATCATAA11.0204081632653061No Hit
ATATAGAAGAATTCTACGATATATATAAGATCCATCCGTATAGATATCAT11.0204081632653061No Hit
CAATAAAGATCTTACTCAGAATGGTCACCCACACTCTCAAGTGAGCTCCA11.0204081632653061No Hit
ATGAAGTCTGTTGTTAATATAGAATTTATGAGATTTATGCGGATTAACTA11.0204081632653061No Hit
ACCGCATAATTATTTTATGTGATGGCAAACTTATTTCAAGTTATAGAGTT11.0204081632653061No Hit
ATAATTTACTAAACCAACAATAAACGATTTTCCAAAGAAGAAAATTAAAG11.0204081632653061No Hit
TTGACTGGCTCCACCGCAGCAGCAGTTGACAAGATGTACTTCTGTCACCA11.0204081632653061No Hit
GTGTAAATAAACCTAAGGAAAGTGAGAAAAAGAAATAAAATTGAGTAGAG11.0204081632653061No Hit
GTCAGTCCTCTGTAAAATTATCAAAATCCCCCTCTGAATCACATCTCTGG11.0204081632653061No Hit
GTTAAGAAAGAGTATACTTTGAGAAATACTGTCTAGATGGCTTTTTGAGA11.0204081632653061No Hit
ATTCAACGGTGGATGTAATATGGAAAATTTATCTTCATCTTTAGGTGGAT11.0204081632653061No Hit
ACGTGAAATATTTATTTCTGAGAAAAAACAAGGTTGAATGTTCAGTAAAC11.0204081632653061No Hit
CGACGGAGCATCTTACTTCTGAAGACACTCGGGGTTGTGAGGGAATATTT11.0204081632653061No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)