FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_055.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_055.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1153
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAACAGTGATTGTCCTGGAAGCTCAGCTCACAGGAATCTTGAGATGAC40.3469210754553339No Hit
GTTGTGTTGTAAATAATGTAATCTTTGAGTAAAACACTCAGAATGCTTTC40.3469210754553339No Hit
CATCAAAGTATACAACGATGAAATGTCCTATAAATGCACGTAGAACATGA30.26019080659150046No Hit
CTATTATCTGATACCTCACCCATTCTCTCTCTCCTCTTTCTCTCTCTATT30.26019080659150046No Hit
ACGGTACTTTATATATTTACAGCATTTGTTTATAACTTTTCACACAACTA30.26019080659150046No Hit
TGCGTGTCCGACCTACTGTCTCCTCCAGGATTTCTTTATTCTGCCTATTC30.26019080659150046No Hit
CAGTTGCATCCTTATTCGAATCAAATTGTTCTCTACTGCTACAAGCATTT30.26019080659150046No Hit
GATCTTGGTGGAATTGCCACATATGAAATTGAGCACAATTTTGCAAAGAA30.26019080659150046No Hit
ATTTTAACACCCAACTCGGTGCGGTCTTAAGACGTAAGTGGACCCAAAGA30.26019080659150046No Hit
CAATGAAACAAAGTTCAGAAGTGGAAGTTTAAAAAACTAGAACTTACACT20.17346053772766695No Hit
TATATATATAGCTCCACGAAGCCTAGGGAAAGAATTGACCCATATTTGTT20.17346053772766695No Hit
AGGTCGGAGAAGACGAAAATTGGAAGCATGGTGAGTGGAGCGCTAACAAG20.17346053772766695No Hit
TTGTATAAACTATGGGGGTCCATAACAAGTAATCAATTTTGTCACTTGTC20.17346053772766695No Hit
GGCATAGCTTAGTTGCAGAGGACTGAAAATCTTTGTGTCACCATTAGTCA20.17346053772766695No Hit
GAATAATTTAGCAAACCATAACATAGACATTCTGTTGCAGAATATTACTA20.17346053772766695No Hit
ACCTATATATAAGCGAAATCATAGTCGTTGGTCATTTGATCCATTTTTTG20.17346053772766695No Hit
CACATATAAAATATAATTATTTATAATATGTAAATATGTAAATATTACCA20.17346053772766695No Hit
CATTACTACATCGATTCACAACCAAGTCTACAAGAATTTTGCAGCCTGAT20.17346053772766695No Hit
ATCAATAGACATGAGATTAATGCTATATCCAGTATCATAGAGTGAATCAA20.17346053772766695No Hit
CGATTACACAGGTCTAATTAAACAATTTTTTTGGGCTAAGTGGGCTGGCT20.17346053772766695No Hit
GGCATTAGGTTTCCAGGGCAAAGTACTCCTTGCATTTGAAGACAATGGAT20.17346053772766695No Hit
TACTTAGTCTCACTGGAGCGTGATGTATTGGGAAAATCCACTGCTACTTG20.17346053772766695No Hit
GCCTTACAAATACGAGTTAATCCCACAAACTACATAGATCCTTTTCTATC20.17346053772766695No Hit
GTATAAAAAGTTGGCCATTTTCAAATCTGAGCTTCTTCTTCTGAAATTTC20.17346053772766695No Hit
TTTTGTAAGTTGGTGATTAAAACATCTACTTTTTAAAAGTTCATGTTTTT20.17346053772766695No Hit
CTTAATGGACATACCAAAGAAAGCATGTGACAGAAAGGTATGATTAAAAA20.17346053772766695No Hit
ATTTCTCTCTTTCAGATCTTTATTTTAAGACATTCGTTATTACTAGACTG20.17346053772766695No Hit
GTGACTAGTTTACAGGAACGAGGGGCAATGGAATACACTATTGTGGTAGC20.17346053772766695No Hit
AGATAGACTAGAAACGACATCTCTTATGTCAATGACACCAAAGGGATATT20.17346053772766695No Hit
GAACACCTGGCCGCCGCCGATCACCATCAGTCCGGTCTGTCTCTTATACA20.17346053772766695No Hit
CTTATGGATCCATCCCCCGAGGGAACCGGACATGATAATTTTTCATCATC20.17346053772766695No Hit
AGCATAAACTGCTCGTTTTTCCTTCCCCGCGAGTATAGCATGATGAGCCC20.17346053772766695No Hit
GTCTTTGGCTTTGCTTGATATCTTGCACAAACTCCCACAACTAGGCAGAT20.17346053772766695No Hit
ATATTGGCTTCCTCTATTCACGAACTGTGACTTAATTTCCGGACGTTCTG20.17346053772766695No Hit
GGTTAANTGGTCACATTTTATTCATGAAATGGGTTGGATTGGTATTAGTC20.17346053772766695No Hit
ATATATAATTTATTCATACTCCATAAGCATTTCATGGAGCTACTTAATTC20.17346053772766695No Hit
ATTATGTATTAATCAATATTCGATTGATTGGTCTGAGGTTATTGATAAAA20.17346053772766695No Hit
ACCAACGTCTGGTCTTGATGCTAGAGCTGCTGCTATTGTTATGAGAACTG20.17346053772766695No Hit
GTAAGAGAGAAACACAAGCAGCATAAGGTAAACTAATTAGTACTTATAAT20.17346053772766695No Hit
CAGTAAATACTTTTCTAAAATATAAAAATAAATACAACTAAAACTATTAA20.17346053772766695No Hit
CTCTGGAAACAACATTTCACAAGCACAAAGAGTTATCAACTGACTCGGTC20.17346053772766695No Hit
GATTATTTGGGCCTAAATAAAAATCCTCAAAACGGAGTTGTTTTTGATAT20.17346053772766695No Hit
TTTTTGTATCGAGCTAAAAGCTGGGACTTCCAGATTTTTCTCAGTCTAAT20.17346053772766695No Hit
GTTTCCATTTGCTTGTGTTTACATCTTGTCGATTCTACTAGAAATTCTAT20.17346053772766695No Hit
GTATTCAATACTTTAAAGAACTCTGTTTCACCTTCAGCGAAATTCTCCGA20.17346053772766695No Hit
CATGATGTTCATATCGATCTATTATGCGCCTCTGCATTTAGCATTGGGTA20.17346053772766695No Hit
TTATATCTGTTTGCACAAATACCTCGACGAGTGCCGCTCGTTAATACATA20.17346053772766695No Hit
GATTATNGAAATATTGAAGATCACGCAGAGCTTTGTCTCCAAGTCCGTGT20.17346053772766695No Hit
TCGATGAACCACTGACATTTATTTTCCTAGCACCCAGATTAATAACCAAC20.17346053772766695No Hit
TGATTGTATTGAACAAAAGGTTTGTTCTGAGCTTGTTGCGGAGCAGGATA20.17346053772766695No Hit
ACCCTAATTCATCGCCAAAAATCCCAAATTTATTACTCACTCACTATGAT20.17346053772766695No Hit
GGTGATAACCGGCCGGCCATGTGGCTTGTCTTATGTGCCGAAGTCAACGC20.17346053772766695No Hit
TATATATATATATATATTATGTGAACGTTGGTGATTGGAGTACATGATAA20.17346053772766695No Hit
GATTTTAAAATAGTGCAAAGTTGTAATTTTGATTTTTATTGTTTGTAGAG20.17346053772766695No Hit
GTTTCATGGAGGTAATGATAAATAGCTTGCATTTATTTTCAGATTCCGCA20.17346053772766695No Hit
AATTCGAAACCCCCAACGTCGAGTTTAATTGCTAAGGCATCGTCGTGAGG20.17346053772766695No Hit
ATATTAACCGTATCTAATTATAATATATTGTGAACCAACATAAATATTCT20.17346053772766695No Hit
ATATTTGTGGTAGCTCTCAGACAAATCATTTGAACAAATGTTTCTTTGTT20.17346053772766695No Hit
ACTTTGATGCTTTTGTTTCACCCGACAAATCGGCACCTTTTAGGGTTTTC20.17346053772766695No Hit
GCTGCCCCGAAAAGGCCAAGACCGTTGATTATATCCATTCCGTACTCATA20.17346053772766695No Hit
ATTTTGGAATGTACCAGTTGTGTTCGAAATGATATTAAGAAAGAATCCTC20.17346053772766695No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)