FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_053.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_053.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length151
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATATATCACTAACATTGAATATGTAAATGAACTAAAGCTTAATCGCCA15.263157894736842No Hit
GTTTATGGCAGCGGCTATAAATGCTGGAGCTGTCACTAGCAGAGGCCGGC15.263157894736842No Hit
AATCAAAAACACAACATTTGTTAAACAAGTGAAAATTAGTTATTCTTTCC15.263157894736842No Hit
GGTCACTTGGATGGCATGGTGTCACTATCTGGTCGACTAGACAATTCAAT15.263157894736842No Hit
CAATTATCACTAAATATCAATATACACAGTTTTTACCATTTTCTCTTATT15.263157894736842No Hit
CAGTCTGTAGCCAAACGTAATCTTTCCATACTACTCAACAATTTTTTAAT15.263157894736842No Hit
AGGGTGTAGTACTATTTGTAGTAGCGGCCCTTCTATATCGTATTAACAAT15.263157894736842No Hit
GCTAAGCATTCTAGAATTGTAGTGGAGATGGTCTTACCTTTGTGATATGT15.263157894736842No Hit
CAACAAATCTCTCAAAGCAAAAGTCGAGAAAACTAGCAACAAATGGCCAC15.263157894736842No Hit
TGTCCCATGGGACTAATTTTCAGTTCCAACATATAAAGAAATTCAACATG15.263157894736842No Hit
ACAAAAAGAGTACTCAATGCATAGTAAAAAACAACAATAAATTTAATAAA15.263157894736842No Hit
GTATATATATAATTAATAAATAACTAAATACATAATCTTTATTTTCTATT15.263157894736842No Hit
GTTTCACAATCACTGTCCAGATTTTTCTTTATCCGACTCTTGAAGTATTC15.263157894736842No Hit
GTTCACTAATAATAGTGAAATCACTGGTGCAGAGTCAAAATAAGGGAGAG15.263157894736842No Hit
TAATAAATCATTATAAGAAAAGTGAATTTATATTAGAAATACAAAAAAGG15.263157894736842No Hit
TCATGATAAATTAATCATCTACTATGCAAATACAACATAATAAATTTAAA15.263157894736842No Hit
CTACCAGATTAATCAAGGTCCACCCTAATCTAATCCATCCCTAATAACCC15.263157894736842No Hit
ATAACAAACAGAAACTAGAAGAAAAAAAGCAATGTTGCATCAGACTGCTT15.263157894736842No Hit
CTCTAGGATGAGAAACCTTGGTTACAAGTAGTCGTGACCGAGGCTGGCCC15.263157894736842No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)