FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_051.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_051.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCTTATTTACACTGGAGACAGTGTAGTTTAAGTCTGGGGGAGGT21.9047619047619049No Hit
GGATTGGGTTTTGACTATCATCATTGTGCGTTGAAGGATCATTTCTTATT21.9047619047619049No Hit
GGGTTGTACTCAGCTTTTGTACCAAGCTCTTGGTGACTGTTTGAGACTAT21.9047619047619049No Hit
GTCTTTGACATCCAATTATACCACTGAAAAACTTTTTTCATTTTTGAATG21.9047619047619049No Hit
CCCAAATCTAGAATCCGTGGTATGCAAGCAGTAAAAATCGATCACCAATA21.9047619047619049No Hit
AAGGATAACTTAAAAAGTGACCAACCTGACATCTCCGAGAGGCTGGCCAA21.9047619047619049No Hit
ACATTATTGCTCAAAAGCAACTCAACAAAAGTTTCAAATTTTGAAATCCA10.9523809523809524No Hit
GCATTGGTCTAACATTACATTCGCATAAAATATTGNATTGGTAACAGTGT10.9523809523809524No Hit
GAGTAGTCACCTTGTTAGATCTAGGGTTTCAAAAAGGATTATGAAGGAAA10.9523809523809524No Hit
ATTCCATTATTGCTAGATCGAATTCTATGGATATGATTCGGTGAAGAATG10.9523809523809524No Hit
GAATTACTTGGCTGGTGTAGTTCTTGCTGAGGCATTTTTTCTTGAAACTG10.9523809523809524No Hit
ATGTTACAAAGAGTTACATATTTATAGAAAACTTAAACACAAAGATAAGT10.9523809523809524No Hit
GGGCTGTTCAAAATGAAACTCAATAACATAATGCATAAGTTGATTAAAGA10.9523809523809524No Hit
TGTGTCCCCTTCTCTTACACGTTCACATAAAAGCTTAATTGCTTTGCAAT10.9523809523809524No Hit
TTTAACCCTCTCTGAGCATTCTGATATCCTCTTGTTGCTTGACCAACTCC10.9523809523809524No Hit
ATATTGCATTCAGTAATTTTTTTTTTATCTCATACAAAATTTAACTAAAT10.9523809523809524No Hit
GGGTTGAGCAGGAGAGAACGAGCAAGTTTCGAGATCGATCACAGCGAATC10.9523809523809524No Hit
ATGATGCTAAGACAGAGGACTTGAGGGATTTGATTATTCAGTTTACTCAA10.9523809523809524No Hit
ATATCTGACAGTCCGCATCTCGACTGATTGTCGAATTCAGAAACAAAAAA10.9523809523809524No Hit
AAATGAATTATATCGAAAATTTATTTTCAAACAGAGTCAAAATTATTGAA10.9523809523809524No Hit
GTGTATACTATAACCTTCTGATCCACTAGGTAGCTCATACTCTATCGAAA10.9523809523809524No Hit
GTTTATTACATTAAAGGCATATATTTTGTAGGATAGGAGACATTTGTTCA10.9523809523809524No Hit
ATATTACACAGATACTGAAGAATAATTTTCAAATACAAAAAAATAACAAG10.9523809523809524No Hit
ATTTCATTTGGAAATGTATTCTACATTTTTGGTCCTTTTCTTTNTTTGAT10.9523809523809524No Hit
TCCTTGGGATTGAAGTAAGCCGGGGTCCTGAAGGAATTTTCTTGTCTCAG10.9523809523809524No Hit
TATATCCTCCATATATCATATTTACTTGTACATATCTCGTATATCTCGGA10.9523809523809524No Hit
GTGTTTAGGCAAGTGGAAGGTCCTTGAGAGGCTGTCTTGACCCCTCTGGA10.9523809523809524No Hit
ATGTATGCTTATATCAAATAGCACAGCAAGTTTCTTCTCTAGGTCAATGA10.9523809523809524No Hit
AGAAAATTGATTCAAGATTCCAAGAATGGTGCTATCTTAGTTTTCAGGTT10.9523809523809524No Hit
AATATATTTAAGAGATGGTGACGGGAACACTGAGATAGAGATGTTTTTTT10.9523809523809524No Hit
GATATCGAACTGTTTTGCCAGCGGAAAGGGGAAACACTATCAGACGCATG10.9523809523809524No Hit
CATATATGCCACTCTTACGGTAGGGAAATTCACTATACATATGGTGTGTG10.9523809523809524No Hit
GAATTTATGATAATCATATCGATCATAAGTCTATGACAATGAAATTTCTG10.9523809523809524No Hit
ACTTTAATCTCAATATATAAATATTGTATGTCTGAAATCACATGGCCCTG10.9523809523809524No Hit
AAATATATATTCTAAATCATTAACAAAACAAAAGTTACAACGGAGAAGGG10.9523809523809524No Hit
ATACCTTCCTTATCATTGACGGAAATGATAAGGTCATCAACATATACCAA10.9523809523809524No Hit
CGATTTCAGTACATTGATTTGTTGGCCCGTTGCTTCTCAGTAAGTCCTTA10.9523809523809524No Hit
TCTCCACATCCACAATTTTGCCACTCTATCTTTGTTGGTGACGTGGCATT10.9523809523809524No Hit
AAAATATGCTCTGCTTCTTTGCTTTATCTATTATTATTATCTGGAATGTG10.9523809523809524No Hit
CCATCAATGGTCAGACATTCGTAGTGAATGGTCTTGAAGCTCATGATGAA10.9523809523809524No Hit
CCTGAAAAGCTTTCTGGTATCACTCCTGATAACTTGTTGTGAGAAAGATT10.9523809523809524No Hit
GATATTAAAGTTCAAAATCTAAACACAGCTTTCACCAACAGATAGTAATC10.9523809523809524No Hit
GCATAGGGGATAATGATTAAAATTCACCATTGAGAAGTTCTTAGCTTAAG10.9523809523809524No Hit
GCACATCAATGGGAAAATAACATCACTCCAGGGTCTGTCTCTTATACACA10.9523809523809524No Hit
GTCTTACCTTGTTATCAAAACAAATGCATTCGTAAAAGATCCAGTTGGTA10.9523809523809524No Hit
AGTTGGGCTTTGATGTTGATCCGAATGAATCATCTTTTTCGCGGAGTGAA10.9523809523809524No Hit
GTTCATCTCCTTCCAAGCAAAACCCAAGAAGTCTAACAAGATTCCTATGT10.9523809523809524No Hit
AAACAAAAGCTGATAGCAGAGTACAATAAGCTGATTCACACAGTAGCTAA10.9523809523809524No Hit
CCTCATACTCCTTCTCAATCTCAGCTTTGAACCTTTCTGGGAAAGGACTT10.9523809523809524No Hit
CTCGTCTTTCTTATCGTAATGACCTTTGTTCTTAATCTCATCCCACCAAG10.9523809523809524No Hit
GTGCTTGTTTGAGTACCCTAGGTCGAACGCCTGTGTCGAGTGCTCGTTTG10.9523809523809524No Hit
GTATAATATAATGTTGTGATTAAAAGATGTGATATTAATAACTTTTCATT10.9523809523809524No Hit
CATTAAGTCATTAAATTAATATGTTTGCTCGCGGTAATTGTGAACTCTCG10.9523809523809524No Hit
GCACCATCAGAAACCAGACTTTCCAAAATTCTCTCTGTGATATGGGTGCT10.9523809523809524No Hit
ATGCAATACATATCTTATATATCTAAAAAATATATGTCTACTTGCTTTAT10.9523809523809524No Hit
CTACACCGCTGCTCAATACCTTAGGGGATCTACTCTATTACATAAGTAGA10.9523809523809524No Hit
CGTCATTCACCCCAGCTTTTGATAGATCCGAGACTCAAAGATTTTAACCA10.9523809523809524No Hit
TAAGAAAACAAAGAGAGTTCAGAATTCTTCTCTCTACAAAGTCTCAGATC10.9523809523809524No Hit
AAAACATTGTGAACCAAATATCCCATACCCTCCACGCAGGAGAGGAACTC10.9523809523809524No Hit
GTCATGGACAAGCTTAGGCAAAAGGAGCATATAAAGGAGCATATAAAGGA10.9523809523809524No Hit
GGGTTTTTAAATATTAAATTTTTGTTAGAGTTTGTCTAAAACTTTTTTTT10.9523809523809524No Hit
CTATTGAATTCTCTCGTTAATTCTCAACTCCTGAGAAAATTTCCAAAACC10.9523809523809524No Hit
ATCAGACCCTCCAATCACATATATCTTTCCATCGATGTGTTCGGAGACTG10.9523809523809524No Hit
GGCTTACACATGTATTGATGCGTTTCTGATCAATTGTAAAAAAAGAGACG10.9523809523809524No Hit
GTTCATGATTGTTCACTTACAGAGAACTGGTTTGTGAGAACTGGAGCTTC10.9523809523809524No Hit
TTTGGCGATCTCAGATGTGTCGATATCAATGATGACTCATTATTTCGATG10.9523809523809524No Hit
CATCATCATATGCCACCATAGCTTGCTCCTCTCCGCTCTTTGATGAGCTC10.9523809523809524No Hit
AATCAAAGGTCTCTCATTCTTCTCATCTATCTCAAGAATGTGAAAATCTG10.9523809523809524No Hit
CCATGGTTTTATCCGTCGACTCATAGAGATGACTCAGAAGAGAAACCACA10.9523809523809524No Hit
GAAAGACCCACCAAAAAACCGATAACGGCGTAACCCAACCATGATACCAT10.9523809523809524No Hit
AGTATTTTATCATAAACTGTCCTGAAATTATGGGTCTATAAAAGATTATA10.9523809523809524No Hit
ATCATAAGCTGTAGTGATTTGGTAGTTTTGGAAAATTTTAAAACTTACTT10.9523809523809524No Hit
TAATAAAAGAGGCCAAAGTTATTGCATCTACACTGGGGATACTTTGCTTA10.9523809523809524No Hit
GGTAAAAACTCTCTGGAGGCAGCCTGATCCAACAATCTCTTTTATAGGGA10.9523809523809524No Hit
ACTACATTGTGTTTTAGTATTGTACCATCGCCAATGACGAGGTTCACGCG10.9523809523809524No Hit
CTTTGCGAAGAAGTGATCATCCGGCTACCCCCGGAAATGATCATCCGGCT10.9523809523809524No Hit
TTTCCTTATCTGTTAAAGAAAAATCGAAGGTAACATATCAATGATTTAAC10.9523809523809524No Hit
TATATATATTTTTGAGATTTAATGTTATTTGACAATATCGAAATGGGTTT10.9523809523809524No Hit
CCTCTCTGTGTTGATTTTGGGTTGTGATACCTAGCCAGTATCATATCACC10.9523809523809524No Hit
ACTTGGTGAATCGGTGAAGTGTACTGTCTTATGCGCCTTAGTGCGATCGA10.9523809523809524No Hit
GCTCCACTCTGTTGCTTATTCATTCTATAATAACTGCAGCTTCGGTAAGC10.9523809523809524No Hit
ATAGAAGACGGGGACGATGCCTTCGTTGCCACGCCGGGCGATGCGGAAGA10.9523809523809524No Hit
TTCTATCGATTTCATCTCTCGCCTTGTGTAATAGCTCTGGATGATTCAAA10.9523809523809524No Hit
GTTCTAACGTACTCTAGATCATCTATCATTATAAAAGTCTAAAACAAACC10.9523809523809524No Hit
GGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTC10.9523809523809524No Hit
GTCGCACAACGGAGAGGACCATTCGGCTAAGGCTCCGTCGCCACATGCAC10.9523809523809524No Hit
AGTAAATACAATGTGGTACCATCACAAAATGAAAACTACATTTTCGATAT10.9523809523809524No Hit
ATTTTATTCAGACTATTGTGGTTTTTGGGTTTTGTTTGTTTTAGATTTTG10.9523809523809524No Hit
GAATAAAAGTTAAAAACATTACGAAATTTGCCATTTTTCTACTCAGTTAG10.9523809523809524No Hit
TTAATGAACAAAATCTTGCGGAATCAAAAGTGGCCCTAGTCTACGGTCAG10.9523809523809524No Hit
CTAATAACCTTGCAANACATCGAATAATCAAGACACAAATCGCCTTATTC10.9523809523809524No Hit
ATAATATTCAGATATAATGAAATATTTTAAGTACCTCCAGTTTATGTTCG10.9523809523809524No Hit
GATTCACACTATGGAGTTCACTGCAAAGAATCTCAAAGCTACGGGTAAGA10.9523809523809524No Hit
GTCTTACTGTCAGATTTTATTGCATCTTAAAAGGGAACCATATCTCATAT10.9523809523809524No Hit
CTTCTTGCTCTCTCTACAAGTGTCCAGATTCAGATTGCAGGTTCTTTCTT10.9523809523809524No Hit
ATCCCACACCCAATAAAATAATAAAATGTTTAAACATAAGGAAATGTACC10.9523809523809524No Hit
GTGTAATTGTAAAACGTCGCGATTTGGATTCACAGCAAAGATTTCAAATC10.9523809523809524No Hit
GGGTAGGGTACTACGAAAGGAAGTTGATCATGGATTATCCATAAAGTTAG10.9523809523809524No Hit
TTGTTAATGAACCTACCTCTGTTGTTGATTCTATTAGATCTAATATTTCT10.9523809523809524No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)