FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_049.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_049.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTGCCTACTCGACCACNCCCTTGAGTGGTGTGCTCCAGTGCTACAGT21.3888888888888888No Hit
ATTAAACACTTGCTTGTCTCAAGCAATGATTTAGCAATGCGAAGTTTTTT21.3888888888888888No Hit
GAATATTGTAGTTTTTTTATGGTACTTTATCAGATAATTGTACAAGGAAA21.3888888888888888No Hit
GTACTATAAGAATCGGTACTGAACATCCCCCCTGTAATTGTACAGGCTCC21.3888888888888888No Hit
TTTTTGGATCGTGTTATCGTATAATTCGGTTGGCAAGTAAAGGAAAGAGA21.3888888888888888No Hit
TAATTATACTTTTGGATATATAGCTGTATTTCAAGTATTTTGGTTATCCA10.6944444444444444No Hit
TCCAAGAGCTGCTCGCTTACTCTGGCTCCAGGAATTGGAAATATCTACTT10.6944444444444444No Hit
TAACATAGAACGTCTTCTTCTCCTTTATCACGTATATCGACTCTAAGAAA10.6944444444444444No Hit
AGATGAGTCGGTGTACAAAACGAGTCGGTGTACGAAACATGATGGTATAC10.6944444444444444No Hit
TCTTCAACCACATTGTCTCTACCAACAACTTGATTAAGCTCTTATTGAAC10.6944444444444444No Hit
GATCAATTATTTATTTTTATTTATATCATAGATGTTAAATTTAAGTTAGA10.6944444444444444No Hit
GAGAAGCTACCCTAATAAATCCCCAAAAATCCCAAATTTACTACTCACAC10.6944444444444444No Hit
GTATTACTTATGGCCTCAATATAAATCCGGAGAATCATGGATCATTCAAA10.6944444444444444No Hit
GTTTCCTCCTCAGCCCATTGCAGTCCACAAGACTTTAATCTCCAGAACTT10.6944444444444444No Hit
AATGTATAGAGTGTAACTAATTACCACAATCGCATTGCAATAAAATCTAG10.6944444444444444No Hit
AACTAGACGAGTGACGGAAAATATAAGTGCACTTTGGTGAGGTGGGTGGG10.6944444444444444No Hit
GAAAATGGGTTGCTGAGTATTTGGGGGGGGGGGGGTGTGGGGGGGGGGGG10.6944444444444444No Hit
GTTCAGAAGCTATGAACTGAACGTTTTACTATATTTAAGTATTTATTCTG10.6944444444444444No Hit
ATATTAGCAAAGATGAAACCTACTTCTTACAGTATAATTTTTTCTTCGAG10.6944444444444444No Hit
CTCGGGTACCATACGCTTTCATCGATGGAAGCACAACAGAAGGTGCTTCA10.6944444444444444No Hit
ATCAGGTGGTGCAACAATGNAAACAACAAGAGGACAAGAAACTTTGCAAC10.6944444444444444No Hit
TAGTGATCTTGCAGGGTTTAGTGGTTTACCCCTGTAAATACATAAAAATA10.6944444444444444No Hit
ACACAATATGTGGGAATATTATTTTATGATAATTTTCTTAAGTTTTTTAG10.6944444444444444No Hit
GTTTTTGATTGAAGGGAATTCTATGAAGAGAAAATGGATTATGGGAGTGT10.6944444444444444No Hit
GGTCCTATACCAGTTACTCTCAAAGGTCTGAACTACTTACTCTGGGCTAG10.6944444444444444No Hit
CCCTAAATGCCTCCGAAACAGAACCAGTAAGCTCTTTGGAACATTTGATA10.6944444444444444No Hit
CGATTATTGAGTGCGTAGGCGATTAAAATAATATTCAAAGGTGTACCTTG10.6944444444444444No Hit
CTATAAACAANAGAAAATAAATTCACAACACAGAGAACTTAAATTTTGTT10.6944444444444444No Hit
TGTCTGGATTCTCGCCCAGCCACTGCCAGCAAGACAGAGGCCAAAGACGG10.6944444444444444No Hit
ATTTACAATTGATTGAAAAACGTGTGTTTTGTCTCTCTGTGCTTTGGTTG10.6944444444444444No Hit
CCCCGAAACTGGAACCTCTCGATGGAACTCAACCCGCAGCTTGCTTCTGG10.6944444444444444No Hit
CTAGCAATGTGTATAGCAGCTTGATTATCGCAATGCATCGTGATGGGTCT10.6944444444444444No Hit
TACTTTCCCCGGTTCCGTTGCTACTGCGGGCTTTACGCAATCGATCGGAT10.6944444444444444No Hit
AGTTATACCTCTTATTATGGGTCTTTTGGTAGCACTAAAAAAATACTAAT10.6944444444444444No Hit
CCTGAATCCAATATCCAGGAAGACATAGAAGAAGGCTTACCAGAAAGTTT10.6944444444444444No Hit
GAGCTAGACAACAAAAATCAGCAAGGTAGATTTCAATACATTGTTGGTTT10.6944444444444444No Hit
TATTAAACATAAAATTGTATTTAAACAGTTAATTCGAAAAACAAAAAAAA10.6944444444444444No Hit
GGAACACTATTTTAAAAAGAAAAAGAATTCTAATTTCTTAGAATAAAATA10.6944444444444444No Hit
AACTAAACAAACCTCTAATGTCAAATCCCAAATCTACTACTCACACATGG10.6944444444444444No Hit
TATCTGATTATAAGGATTTCGACTCAGTGTCGAATCTAGGACTAGAAAAA10.6944444444444444No Hit
ACATAGTGTTTGCGATCCTGTGATTTCTATCCCTAGAGTCCCTGTTTTCC10.6944444444444444No Hit
ATTTCTAACTGTCTTGATCACACACACACAAAAAAAAAAAAAAAAAGAAG10.6944444444444444No Hit
GCCTAGCTCCATAACATCCTGGGATTCTTGGAAGAGGTGTTTCCTTACCA10.6944444444444444No Hit
CAATCCAACCTCTTTACCCTTGCTCACATCAGCAACTTCACTTGTTCCTT10.6944444444444444No Hit
GGCTTATTCTTACTAAGACCAGTTTTCTCTCATGGAAAATTGTATATTGT10.6944444444444444No Hit
CTTTTATTGATGTTCCTGTGAGCTGAAGATACTTGATATTTGTAGAGATC10.6944444444444444No Hit
CATATATAATAACTCATTTATAGTAAATGATTATAAATAAAATAGTATGA10.6944444444444444No Hit
GCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTT10.6944444444444444No Hit
GTCTCCATCCNGAACTTGCAAATTCTCCACCAAACCTGTTGAAGTCTTTA10.6944444444444444No Hit
GCTTGTCGTCAAGAAGATAAGTGAAAAAGAGGAAGCATTTCCTCAGACCC10.6944444444444444No Hit
CCACCACCACCATCTTCTTTCTTCTCCTTATTGTGCTCTACCACACAGTT10.6944444444444444No Hit
AAAACAAAACAACAAGGTCTACTCGACATAAATTAGGAATAGATTTAATT10.6944444444444444No Hit
GATCTGGAGTTAGAATCAGTTTGATAACTCCAACAGGTGAAGTCATCAAA10.6944444444444444No Hit
GATTCATACACCTGAGATAAGAGAAAGTAGAGATGTAAGTAACAAAAATA10.6944444444444444No Hit
TGCTCCATCAGCAATTACAAATCAATCATACGTCTAATAGCAATGGATTT10.6944444444444444No Hit
AATTATAAGAAAACCAAAATCAAATTTAACAAATACAAAAAGAATAACCA10.6944444444444444No Hit
AGTATAGTTTATGCTCTGAGTTATTGTTGGACAAGACTATCCACTTACAC10.6944444444444444No Hit
CTCGCACACCGGTTCAGCCACTTGAGGAGATTTACAACATTGTGAGACAT10.6944444444444444No Hit
CGTCTGAAGGAATCAATGTTGGACTTATTGGATCTTTATCAATTCATGCC10.6944444444444444No Hit
TAATACAACTGAACCAATAGTCAACTCAATCTTATATAGATGAAGTACAT10.6944444444444444No Hit
CAGGTAATAAATAAGAGAATACTAAAGATTCGATCCATAGAATTTCTCAA10.6944444444444444No Hit
GAATAGAATAGTTGGTTTACGTTATGTAAGAAACACTTGTATATGTGATA10.6944444444444444No Hit
GCATGATTGGGTTTATTCTTCATTGGACGGAAATTCGAAGATACATAAAT10.6944444444444444No Hit
TATCAATGGAGGTCCAATGTTTGATCTTGTCCAACAAAAAATAAATAAAA10.6944444444444444No Hit
GTATTGCGGCTTCAAGTGAGTTTTGAAGTAGTCCAAGAACCCCCTGATCT10.6944444444444444No Hit
GACATAACAGGTTCACGTGTTTTTAAAGGCCTGAAAACAAAACTAGGCTT10.6944444444444444No Hit
GTGTATGTTCCCTCGCGAATCTCAGCAATCACTTGTTCGGATTCCACATA10.6944444444444444No Hit
AGATAAGTCTGGTTATACTTTTAGGTCCTGTACAGACCGATATACAAGAT10.6944444444444444No Hit
AGATCGTGAGATTGAGATTAGGGTTTTGTATTGTGAGAAGGAGAAAGGTA10.6944444444444444No Hit
ATTCTAAACTATTTGTTACGAATTATGATTAATTATTTATAGCCGATCGG10.6944444444444444No Hit
GTAACTAACCACATGTTTTGACTGTTGTGGTCGTTCAAAGCACAATGCCT10.6944444444444444No Hit
GTTCTTTTTCCCCTGTTTTTTTTTTCATGAGATCAAATCAGAACAAGAAC10.6944444444444444No Hit
CATATAAATATTTGGATAATTTCCTAATCTTTTTAGAAACCATAAATCGG10.6944444444444444No Hit
GTTATATTGCGAATCTTTTNGATAAACCTCTTAAAGAATTAGAAGGCCTT10.6944444444444444No Hit
GTCCTTACCTCTTGTATTTAGAACATAAGAAGTAATCTTTATACCTTTAC10.6944444444444444No Hit
GTGTAACTCGTCGGGGGCAAGTAATTGTTAGTTAAAAATTTAGCACACAA10.6944444444444444No Hit
CATTATTCAACAAGATTCGGTTTCGGTATTCTTGCTTCGCCACGCACTGG10.6944444444444444No Hit
GTCTAATATATTATTTAAGCCAAAGGAGGAGACAAGTTCTATTTTAGATC10.6944444444444444No Hit
GTCAATGATTCATCGATACTTACATGTGTTTCTTAAAGTTTAAGATTTTA10.6944444444444444No Hit
TTGCAGACATGTTAGGATACGATAAAATCTTTCTGACGGTGGCTGAAGCC10.6944444444444444No Hit
GAAGATGCTTTGCCAAGAGTAGGAATAATGGCAAATGAGATTAGCAAAGC10.6944444444444444No Hit
GAATAGTTACAGGTAAACGATTTGTGTGGGATAAGGTAATCATGAAACCT10.6944444444444444No Hit
CACTAAAAAAGAAACTTTCACAATAATTTTCATTAACCTCTCATATTCTT10.6944444444444444No Hit
TTACAACTTTGCAATCACTTTTGATGTCGCGTGTTTTGAGAACTCCCCTC10.6944444444444444No Hit
ATATTATGATATGTAGGCTGACTCGCTACAAAAGTTTCAAGGAAGGACAC10.6944444444444444No Hit
CCTCGAGAGCCNGGGGCTTAAAATAACGAAACGAAACGAAAGTATCAAGA10.6944444444444444No Hit
GTATTGACTTGGTAGAGGCTGCCGCGGTCAGATGGTGCAGGTCTGAAACA10.6944444444444444No Hit
ACTAAACACATCGACATATTAAATTTAAAAACCTCCGTATAAAACAAATA10.6944444444444444No Hit
GAAAACGAGCCCAACAAATAAAGAGAAGGGAGCGAAGAAAAGCAAAAGAC10.6944444444444444No Hit
CCCAAGCCATAGTTCATGACATAGGCGTCTTAAGTCACGACATCCTGGTA10.6944444444444444No Hit
ATCATCTTCTGCTACATTTGGATTAATGTTCTCGTCTCTTCTCCTTTTCC10.6944444444444444No Hit
CTCCTACCTATTATCTGGATATACCAAGAAAGATATACGATCTAATGAGG10.6944444444444444No Hit
GGTCAAGACCTCGTCCCACTCTCAATTTCCTTTGCGTTTGCGAGAATGAG10.6944444444444444No Hit
CAATCTAACTTNATATTTTCCTCTAAACTCTATTATAGAGTAAAGTCATC10.6944444444444444No Hit
CTGTATAGGCATTGCATGCATATTGCATATTCGGGGTTTTATCAGGTACT10.6944444444444444No Hit
TTATAAACCTTACTATTAAAAAGTATATTATAAATCTTTTTTTTTTGGGG10.6944444444444444No Hit
ATTTTGATTCTACTGGTTTTCAATTTTTTTTTTATATATAATTTGAATAA10.6944444444444444No Hit
GAATTGTGTTTCACCTTCTACGTTTGAGTAGTCACCTTGTTAGATCGAGG10.6944444444444444No Hit
ATTTATCCTAAAATCCTATNTACGCACTCCCGTATAGAGCTTATACTTTG10.6944444444444444No Hit
GATATATTGGCATGACAAGAAGAAGGAACAAGGAAGAAGAGGGCAGCCAC10.6944444444444444No Hit
TTCCTAACATATCATAAGATTCCCGTTCTTGAAAATCCGTACTTTTCCAA10.6944444444444444No Hit
AAAATACTATATGTAAAAAAAATAAGCGATAGATATAATAGATATATATA10.6944444444444444No Hit
CAGATACCGTCCTAGTCTCNACCATAAACGATGCCGACCAGGGATCAGCG10.6944444444444444No Hit
ATTAGACACCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCT10.6944444444444444No Hit
ATCGAAAAGGGATACTTAATTAGGTTCATTAGACAAAAAAAGGCTTGAAA10.6944444444444444No Hit
ACCTTATATATATATTCTTTCACAAATTGAGACCTAGTTGAGGGAATGAA10.6944444444444444No Hit
GCTGTGGATGATCACTTATCAGAACCTGCAACATCAAGATATACAGCTGA10.6944444444444444No Hit
ATTCATAGCTATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTA10.6944444444444444No Hit
ATTAACAAAAGAATATACACCATTTAATCCTCTTACCCACTAAAAAATTT10.6944444444444444No Hit
ATATGCAAACAACTTATTCAAATTATTTTTACATGTTTAAAAGTTTAAAT10.6944444444444444No Hit
GACACAAAATGATAATTGGCTCATTCTCCAATTACAAATAGTAACATTCT10.6944444444444444No Hit
ACGCAAACCCCTCAAAACCTGGTAGATATTTAAATCTGATCTGGTCTGGT10.6944444444444444No Hit
GTAGCAAAGCATTTATTAAGAAAAATAGAGAAGCTTAATACAAAGGCGGA10.6944444444444444No Hit
ATTTAATATCCTCTGCTTTCGGTTATCTAATAAATCATTTAATGAAAGTA10.6944444444444444No Hit
CCAATACCCCAGTTGGTCCTAGACATATGACCCGCTCTTCGGAAAAGAAT10.6944444444444444No Hit
AGCCCGAGCAGACCATTGTCGGCACCGGCGGCAAGCAGATCCTGTTCAAC10.6944444444444444No Hit
GTGATGAATATGCCAAGAAAGCCGAGGAGGGCCATCTGGATGAGGTAACG10.6944444444444444No Hit
CCCTATCTCAACCGATAGTGACTCTAAAATCTCAAAGATCAAAAAGAGGT10.6944444444444444No Hit
ATTGGTATGAGTTCAAGTTATACCAAATAAGATGTTTACAAATATAATCC10.6944444444444444No Hit
TATATGTACTTAGGGTTTTATATCTAAGTTTTCATGTATATAAGGAACAT10.6944444444444444No Hit
TATACAGTGAGCACCGTTATCTGAAACAGAAAAGACATGTTTATTCCAAC10.6944444444444444No Hit
AAATTACTTAATGGAAAATGTCCTGAATAAATCCAACGAGTTAATAATAA10.6944444444444444No Hit
GGTTGCACAACACGTTGCAGTTCCTCCAAAAGCAGAACCAAATTATTAAC10.6944444444444444No Hit
GTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAA10.6944444444444444No Hit
GGTCTTGGGTTAACACATAGAAGTGCAACTCCTAGTGTTTGCATCATCTC10.6944444444444444No Hit
ATATAACACCACNTAATTTTTATAAAAGAAGTAACTTATTAAGAGAAACA10.6944444444444444No Hit
GTAGTGACTTGCTTCAAACTTTCAGNGATTTGGGGTGGTGTCAACCTACA10.6944444444444444No Hit
GAAAAATATAAGATCATAGAATGCATATGCACCCCCACATGGATGTATTG10.6944444444444444No Hit
GTTATATATATAGCAGAATTAATAACTAATATCTCTATTTTAAAACATTT10.6944444444444444No Hit
GTTGTAGCCTCTGAAGTTGCCTTGAGAATTGCCAAATATTTGGCCATTAA10.6944444444444444No Hit
CCAAACTTGTGAGCATCCAAATGTTAGAGGGCAACTCACCGGAAAACGCA10.6944444444444444No Hit
GAGTAGAACTGTTGGGGTTGTAAACCCCATCTGCAAACTTGCTCCAGTGT10.6944444444444444No Hit
AGAGAGGATGCTGGTGAAGCCAGTTCTGACTACTCAGGTGCTAAAGCACG10.6944444444444444No Hit
GCATATCAGAACCGATATCCGTCTCAACAACATGAAAATCACAGGGAAGC10.6944444444444444No Hit
ATTAGAATCTATACGACAACGTATAAAAAATCTTATACCAAAATCCAGAT10.6944444444444444No Hit
ACATTGGCTCAGTCTACCTNGCTACCAATCCAGTCAAGCACCAGCGGACA10.6944444444444444No Hit
GAATAAGGGGATTGGCAAAAATCCACTAAAATATTTTAAATAGAGTTCTA10.6944444444444444No Hit
CATTTGTACAATACAGGAGTAGCTCTGTTCTTACATATCTCTGACTCTTT10.6944444444444444No Hit
TCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATT10.6944444444444444No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)