FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_047.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_047.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGATGAGTTGCTCCATAAGATGAAGTACAAGGAGAGGGAGAGGGAGAA21.6260162601626018No Hit
CTGAACGATTACATAAAAATCCTAAACACTTAGAGAAAGAGAGATGACAA10.8130081300813009No Hit
AGCTCCAATAGCGTATAGTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTG10.8130081300813009No Hit
CCTATATGTAGCTTATTTATTATTTTAGTGAAAAAAATATCAAATGGTGA10.8130081300813009No Hit
AATCATAACTTGATAAATCTCGTCCCCAGCAAAGGCTAATAGCAGTTCCA10.8130081300813009No Hit
CTATCACATCACATATCCTAAGTTAATGCCTTCAACACTTTTCAGTTTTC10.8130081300813009No Hit
CCTTTTTTTGAATTTTTATTACACAAGGGAATGTGTAATTTGAGTTTGGG10.8130081300813009No Hit
GTTTATAACCTGAGAAGATTCAAACCTCCTGGACGATACATTCTTGTCAT10.8130081300813009No Hit
ATTCTGCAAGCTCTTCCCATATTCTCTTGCTGGAGAAAAAGTTCACTGGT10.8130081300813009No Hit
TCTCTCTTGTTCTTGACAGTTCTTCATAGTTCTTCATTTTCAGGGTTTTG10.8130081300813009No Hit
CTTTTGTTATTTCAAGTCCAAGCTTGGCATACGGAATCTGTATGCTCCAG10.8130081300813009No Hit
ATGTAATCCATAGCTGCAGCGCATGTATTCATACAATAAAAAAAAAAAAA10.8130081300813009No Hit
CATTAAGAGAGCTCAACAAGAACTTGACAAAATTGTGGGCAAAGACCAAG10.8130081300813009No Hit
AATTTGGGGAAGACACTCGAGGGCAAGAAGCTCCAGCTCCTTGCATGAAA10.8130081300813009No Hit
GATCTAAGATTGTATAAACCAACACATACCTTCTTGATAGAGACATGATT10.8130081300813009No Hit
CCCTTACACTCTTTTTCATTCAGACCCCAAACATCTTTCACAACATTAGG10.8130081300813009No Hit
ACTGGATGTACTCTATAATTGGGCTTCTTTAATATATGGGCTGTGAATAT10.8130081300813009No Hit
ATCAATATCTTATTCCACAAGTCTCAGTACCTTCATAATGCCAACAGCTG10.8130081300813009No Hit
CCCTTTGTTATATTGATTCGTTTATTGATGTTTTCTATGATATCTATGGC10.8130081300813009No Hit
CTCACGAACTAATTAATAAATAAACTATAATGAAACACTACGCTCCATTG10.8130081300813009No Hit
GTAGTAAAAGATTTGTAGGCAATAAACCCGAATAACATTTGTTGATTTGC10.8130081300813009No Hit
GAATAGCAGAGCAAGTACAAGTATTAGTAGCCTAGCCAAAATGCGTTCCT10.8130081300813009No Hit
CCCCAGATCTCACCTTTCAAACTGCATTACAACAAATCAACATGTTAATT10.8130081300813009No Hit
CTTGGATAATACCGAGATATAATCTACAGGTCCTCATCATCGTCATCATA10.8130081300813009No Hit
TTTGTAATATTATTAACGATTATGGCATTTTCTTTTCTAAAAGTTCCGAT10.8130081300813009No Hit
ATATTACCTCTGTAAAGGTCACATACTTCACTGCCTGGTGAATGAGTTGC10.8130081300813009No Hit
ATCATCCCTAGGACGAATGTAGCTTCTTCATTCTTTAATACGGAGGCTTG10.8130081300813009No Hit
GATGTAAATATAGTATATATGTACAAAAAAGNAATTTTGGGCCCTAAAAA10.8130081300813009No Hit
TGATCAAGGGGTTGAGGATGATGTTGAGTTTGGAGATGAAGATGATGATG10.8130081300813009No Hit
ATAGCATGGTGGGACAACGCGAATAGAGCCCAGGAGCCGTAATAACCCAA10.8130081300813009No Hit
ATGCTTAAGCGGGTGAAAAAAAACTTAAGAGGCTATTATATACTATATTT10.8130081300813009No Hit
AAGCTCTTGCCATTCGTTGGTTATTAGGGGCNTCCCGAAAACGTCCGGGT10.8130081300813009No Hit
TTACTGGCCTCCACATAAGCGTAGAATCGTAGTTCACGAAGCTGGTCATC10.8130081300813009No Hit
GTCTCCACGAGGTTGGAAACCGCATTTCTCAACAATAGAAGATCTCACGA10.8130081300813009No Hit
CTTAAACCATATTATAAGCATCCAATCTGAAATGACTCAAGTATATTGTT10.8130081300813009No Hit
ATTTAAATGATTCTTTTTCCTTTTAGAATTGCATTCCATTTTAAAAACAT10.8130081300813009No Hit
ATTATATAACTCGAAAGCGAATCAAATTATCAAAAAAACAGTAAATAATA10.8130081300813009No Hit
ACCTTAACGGAACCAATAGATTTGTGTATTGGATTAAAAATTGAGAGGAA10.8130081300813009No Hit
TTATTTATAGGGTGTCTTCTATGTCAAAACTTGGAGTTAATGTGTGATTT10.8130081300813009No Hit
GAACTAGAAGGTCTGTTACTAACATCGAAGTCAACATTAGAGAAAGCAGA10.8130081300813009No Hit
TTATGGTAAGTTTCTGCATGTAGGTTTCTTTCACCTTGTTATTTATAATG10.8130081300813009No Hit
GGTTTAGAGTACAATAGCGTGAGGGTGGATGCATCCGACATTGAGTTATG10.8130081300813009No Hit
GACAAAGAGTCAATTTTGAAAGAACGTATTGTCAAACTCTTTCAGATATG10.8130081300813009No Hit
GTAAGCCGAGTGCAACAACATGCCCAAGCACCCACAAACTCGTTCGTAGA10.8130081300813009No Hit
GTTTATTTATTTTGTTGTACAAAAAAACTTTTTGAATTACCTGTAGAAAG10.8130081300813009No Hit
AATTTATATAAACCAACAATAAGAAATACAAAAATCAATTAATACTAGAA10.8130081300813009No Hit
TATCAAATGTATGGATTTATCAATCATCTCAGGCAATTTCCATCCCAATC10.8130081300813009No Hit
GACCAAATGATGCGCAAAGATCGCGCCAAGGTTAACATCGGGATCTAACT10.8130081300813009No Hit
ACGAAACTGTTGCGCAGCTCCTCTCCTCGAAAATTTATGAAAACTTGAAT10.8130081300813009No Hit
GTTGTGCTCATGAGACCATCTAAAATTATGTTCTCCTTGATCAGGGGAGA10.8130081300813009No Hit
TCTCCAATCCATGTAAATATTTACATAATCATCATTAAGCATGTCTAGTT10.8130081300813009No Hit
GTGCTGACGAATAACCAGCCCGCAATGAATAGTGAAGGTATAGTAATGCT10.8130081300813009No Hit
ATGTGAGGGTTTTATTATGAATTATTTTGCCTTAATTGGTTTTCAATGTA10.8130081300813009No Hit
CTCTTACATAAATGAGAGTACCAGCTGTAGCCAAGAAATGTCTTCTCAAG10.8130081300813009No Hit
TCTATTATAGCATAACCACACCAACTGCTATCTTTTTAGTGCTATGGATA10.8130081300813009No Hit
ATATTTATGGAGAAATACTTATCATTCATTTAGTCTTTTATGAAGAAAAT10.8130081300813009No Hit
GAAATATTTTATTAAGTTGGTGAGGGGTCATTTGAAAGTCTGACCCGAGC10.8130081300813009No Hit
ATATATATGAAACCAGCTGATTCAAACCAAAAAGGAAATATTTTGTGAAA10.8130081300813009No Hit
GGATTGTTAGAGCCGACGTCCCATTTAGAAGGGCAGAATCTAAATATAGT10.8130081300813009No Hit
AGATAANTCCAGTGCTTCTCTACAGCAAAGGCTTCAAGAAGAGAGAGTTT10.8130081300813009No Hit
TTCTTCTCCTTTGTACTGTGAGTGTCAACAACATAAAAGTACGCAATTCT10.8130081300813009No Hit
ATATAAAATAGGTCTATTTCCGACATCATATCCATAGTTAGCGCATTCAT10.8130081300813009No Hit
GTATGTAGTTCACTCTGCAGAAGAAAAAAGCCATTGACTGTGTAATCAGG10.8130081300813009No Hit
GTGTACAAGCTCGTAATGAGGGACGTGATCTTGCAATCGAGGGTAATACA10.8130081300813009No Hit
CAACAAAACATTATTGCAATCAAAAGAAGCAAAATTTGATGGCACGGACA10.8130081300813009No Hit
GTAGAGAGCATTACAAAGAGACCAAGATTTAAACGAAGATAAAGTTTGTG10.8130081300813009No Hit
CCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGT10.8130081300813009No Hit
ACAAGGAAGAAGCTGAGGAAGCAACAATCTGAATAGTGAAATTGCATTGT10.8130081300813009No Hit
GCACTTCCAGTGAACCTATAGAGAGGTACATAGTGGAATGGTCATGTAAG10.8130081300813009No Hit
ATTCACAACATTTCTATTTTGTTTAGAAAAAAAAAGAAATCGAGATTAAG10.8130081300813009No Hit
CTTGTCTCTGTTCCTGAATGTTGCTAATCCAGAATCATTGAGACCTGGTT10.8130081300813009No Hit
TCTCCAACCATATGCCTGTGTAAACCTACCAAAATAATGGGTAGCAAAAT10.8130081300813009No Hit
CAATCTAGAACAGTAAAAATCTTAAAAGAGTTTTCTATTAGATCGTTGAC10.8130081300813009No Hit
GTTTACGGGATGAATAGTGACATTGTTGGAACTCAGTTTACGGGATGAAT10.8130081300813009No Hit
GTAGAAAGTACATATGGGAATAATAAACACATCATGTTTGAATATATCAA10.8130081300813009No Hit
CTTTTTAGCTTTAGATGTGCTACTAGCATTTGATCGAGTTCAGAATCTAT10.8130081300813009No Hit
TCTTTATTCTTATCAATTAACTGTTTGTACAAACCTTTGATTTCAGATTT10.8130081300813009No Hit
CTTCATATCTTCTCATGGATGTACGTGGACGTTACCGCTCATACAGCTCC10.8130081300813009No Hit
AATTGCCCTATGAAGACTCGCGTTCNCTACGGCTCCGGTGGGTTCCCTTA10.8130081300813009No Hit
TATTTGATTTTAACAAAAAATCGCCAAAATTTGAAAATTGATTTAATTTT10.8130081300813009No Hit
GAAACACCATCAGTTGATCAACTTTACCAGAAGCAACATATCCTTCGGAA10.8130081300813009No Hit
CCATTCAGCCATGGATGCTTAGTGGGGATCCTCGTACATGGTGAATAACC10.8130081300813009No Hit
ACCGGAGGGAGACCAATTACGACCACCACGACCACAGTCACTGATAACAA10.8130081300813009No Hit
TTTTAGTATAGNGCTAGAGTAATTTGTCAGGAGTGTCATGTTGAGGGATA10.8130081300813009No Hit
GTTACGTATATTTTCATGAAGATAAGAACGTGATGCTAACAAACAAAAAC10.8130081300813009No Hit
GATAGGTTCTCTATCCCTAATTGGTGTTACACATAAAATACTAGATCAAA10.8130081300813009No Hit
AGCCAATGCGCAAAATCATAGTGAGACGGAAACCAAAGATTGTGCACAAC10.8130081300813009No Hit
TTCCTATACCTATGAATTCCATTGGACCCAGAAATGATACATCGGAAGAA10.8130081300813009No Hit
GTAGATAGTACACAATTGGTAGATATATATATTTCAATCTGAAGTTAAAT10.8130081300813009No Hit
ATATTATGTCAAACAGCTGTCAACTCTATTAACCTGAAAGAAAGATACAT10.8130081300813009No Hit
CAACCAGAACTCTTCTGAATTTACGCCCAAGCCTGTGGTACAGGAGGCTC10.8130081300813009No Hit
CCTCTACAAGTCCCCTCCTCCTCCATACCACAATTAGAATTCTCTATCAT10.8130081300813009No Hit
GTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAG10.8130081300813009No Hit
GTACTCAGAAGTTCTGTCCAGTCATTGTCAGTGAGTGTAGGTCTTTCTTG10.8130081300813009No Hit
ATTTTATTCGATACAAATTTTTTTTTTTTGAAGATCCGCTGTAATAATGA10.8130081300813009No Hit
ATCTGATTAATTGGAAAATGAATCTTGTGTAAGCCGTATTTCATGTTGTC10.8130081300813009No Hit
CATATGTTTATCTTGCAAAAGTCAATATACAGTAACCGAGAAATAGTGAG10.8130081300813009No Hit
GCACATCACCAGATCCAATCAGCATAGCTCAAGGCAAGGTTATCATCTCT10.8130081300813009No Hit
CTGGCATGGAAGAGCAACGCAACCCACTTGGAGGAGGTCAGGCCAGAGGT10.8130081300813009No Hit
ACAGGAGGTACTGCCGAACATGTACGAGCCCCTTATAGTGGAAAAATAAA10.8130081300813009No Hit
TCTTCCCCACTATCTAAACATGTATNATCCTCAGAGGGGTCCTCATAGTA10.8130081300813009No Hit
CCATGGATATTGACTATCTAAAGCATGCGACTTGGATGAAGCCTAACAAC10.8130081300813009No Hit
GAGCACTGTGGCTGCAACCCTTGCTCCTGTCCCAAGACCCAAACCGCCGT10.8130081300813009No Hit
ACATAGTTGAAAACCAAATCCGATTCATAATTTATTTTATTATAAAACTC10.8130081300813009No Hit
AATCAAGCCATGGCACATCCTATAAAAGCTGTTTGTTCACTTGACCTTTT10.8130081300813009No Hit
GATTTGTCCAAAATGTCAGGGTATAACAACAATAGGACTTCTTCGGTATG10.8130081300813009No Hit
GGTATCGTTGATGAAAAGACTTAGACACCCTAACGTTCTGCTGTTTATGG10.8130081300813009No Hit
GATAAGCTAAATGCATTTTAAGCCACAGTAGTCAATAGTCATATAATCTA10.8130081300813009No Hit
GTCATTAGCTTTACTTGCTGAAGCACAGGCATCTGGTGGACGAGTGAGTG10.8130081300813009No Hit
AATTTCCTCTTGTTTATTTGGATAATTTTTTTGTTTAAGATAAAATTAAT10.8130081300813009No Hit
ACTGATACTGATCCAGGCCCTACACTAAGAAGGAGCACTAGACAGAGATT10.8130081300813009No Hit
ATATATCTCAATCATCTTTTCTCTCGATCATATATTTTATTTATTCATTN10.8130081300813009No Hit
ATCTGGGATTCCTGTGGTTTAGAGAATTTTACCTGGAGTCTTCACGTGTT10.8130081300813009No Hit
GGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACT10.8130081300813009No Hit
AATCTTTTATTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAA10.8130081300813009No Hit
ATTATATATAAATAAATGAGTAGGATAAAGGAAAATTTAGAATGACAATA10.8130081300813009No Hit
AAGTAAAGGAGAGAAAATACGATAGAGTGGGTTGCCTCTCACTAAGCGCT10.8130081300813009No Hit
GTCCTATAGCTCCAATAACTTGTGGTCAAGCGGGTCAACTGCAAACCTGT10.8130081300813009No Hit
AAATTATTCAAAATCTCATGTTGAACAATCGGATGAGTGCCTGTAACAAT10.8130081300813009No Hit
TCCTGGTATAGTAGATGCTATCACACATACAATCAAACTCAATTCGATGG10.8130081300813009No Hit
ATAGAATAATAAATGTCTTTGACATCCAATTATACCACTGAAAAACTTTT10.8130081300813009No Hit
CGTTCATTGTCTAATAGTATCCGGCCATTTTGTCTATAAACTAAATTAAA10.8130081300813009No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)