FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_041.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_041.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAATTACCTAAAAAAGGGGGGGTCCGTAGCATAATTTTTTCCAATGCAA14.3478260869565215No Hit
TTTATACTTCTTTCCACATACGGAAATATGAAATTCAGACGCATGTGACA14.3478260869565215No Hit
CTATTCAGAGTAAGCAAAGCATATCGATGCAATTGCTAAGATTAGTAAGT14.3478260869565215No Hit
CCAAAATATCAGTTATATTCCCGTTTTGGTCTCAGATTCGACACTCAGGC14.3478260869565215No Hit
CTTCTATGTAAGCAAGACCCTCGAACCAGCCAAAACTCGGTACTCTGCAC14.3478260869565215No Hit
AAGTAGGTTGAAGTATCCCACTTAATGTCCTAAAGGTTGATGGTGAATCG14.3478260869565215No Hit
AACTAAGATGGTTGCCACTGAACAAGAAATCAGAAAGACTTCCATTAGGC14.3478260869565215No Hit
GTGTTTCTAAACTTTTAGGAAGACTTTCCTAAATGTTTATGAATCTTTAG14.3478260869565215No Hit
CCATAATGGAATCTATTACACTAGCTAAGAAAGAGTGCATGTGACTCACT14.3478260869565215No Hit
GGTAAAAAACCCCTCCCCAAACCGTGCTTGCATTTTTCATTGCACACGGC14.3478260869565215No Hit
AAAAGTTTTCTAAACAAGCTTATCAATGTGAGACCAAATTTCACGCTTCT14.3478260869565215No Hit
TACTAATACTAACTGGAATCAAAGAATTAGTAGATCGGTTCCGCCCAAAA14.3478260869565215No Hit
ATTATAGGATTATAATTATAATATCTAATAAAAGGGGCCAAAACGGATTT14.3478260869565215No Hit
ATCTTGTAAAGAGTGTGTGTTTCGAAATTGTATAAGAATCATAGATCTAG14.3478260869565215No Hit
CACCACTATAGAGGGTTATCCAACAATCTGATGAAATCCAATTTGAGTTC14.3478260869565215No Hit
CAATTAGTTCGAACTTGTTTAGTCTTGAATTGGGACCAAGACAACAAAAA14.3478260869565215No Hit
CTCCTACATCTGAGCTAGTTAAATCCAGCACTAGCTCTGCCTCTGTTTTG14.3478260869565215No Hit
GAACCGAACCGTATGCATCAAAAGGTGCCTGTACGGCTCCTAAGGAATAA14.3478260869565215No Hit
GACTAATTAGGCGATGTTACAGACAAATTGCAAAGGGCTCTTAGAGAGGT14.3478260869565215No Hit
ATTTTATTTTGTTACATACATCTCTACTTTCTTTTATCTCAGGTGGATGA14.3478260869565215No Hit
AGCTCTTTATTTACATTTCTTCATTATTAAATGCTTTAAAAAGCAAACTT14.3478260869565215No Hit
CAATAGTGACACTTTCCATATTTTTCATCGTAGCTCTGCTTAGATCTAAG14.3478260869565215No Hit
AAAGAATGTTATCCAAACGCATTTCAAGTAATTGTAGTAAAACTTGACCT14.3478260869565215No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)