FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_040.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_040.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACAGAGCAAGAGGCTAAAATAATCAGATTACTAACAGAAAACAGAGA11.3888888888888888No Hit
GTTTCAGATTGAAACTTTTTTCATTCTCATTAGGAGAAAAAACAGCCCAC11.3888888888888888No Hit
ACATACTTCATCATGTCAAAGTATAGACGGCCTTGGTTGACTAAACCAGC11.3888888888888888No Hit
TATCAGGGTTTCGACCCAAGTGTACCTGTTGACCAATTAGGGCTTCCTTA11.3888888888888888No Hit
GCTATGCCGACCATTACCAAAGTATCATCTACCGAAGTATCATTCATTAT11.3888888888888888No Hit
GATATATATATATATATATGTATTTTATTCTTTTAAAAAATCAAACAAAC11.3888888888888888No Hit
AGGTATTCAAGAGCAACTAGAACGTTTCCTACTTCAGGAGAAAGTATAAA11.3888888888888888No Hit
AACTTTAACAATATACTATTCATAAGAGTATTACATTTACTAACAAATCA11.3888888888888888No Hit
GCTCTTTCTTTGGCCAGATAAGGCAAGTCTTTGACAGAAAATCGAGGCAA11.3888888888888888No Hit
GAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTT11.3888888888888888No Hit
GAGTTCACTTGCATTCTATAGCATGATCCACGGGTTATAATCAATAATTT11.3888888888888888No Hit
ATATGACATAATGGTAACTCTTGGAAAAAGGTGAAAGAAGTCTTTGCAAT11.3888888888888888No Hit
GAAACCGAAANTCGATAATCAAAATCAAATCATAGCCAACTAAAATATAA11.3888888888888888No Hit
AACTGTAACTTTCTGGGTTTGAATTTGTATAAGACATCACTACACACAGA11.3888888888888888No Hit
GTCAAAGATAATGTAAATTCCTTGAGAATTACATAGGCCAATTCACACTA11.3888888888888888No Hit
TATAAATATAGACCACAATAAATATAGAAATCAATATATAGTTTTTACTC11.3888888888888888No Hit
GATACTATCAACTAAAATACATCAAATTAAAACTAAAGCAAATAATGCTA11.3888888888888888No Hit
GGAACAACGAATCTCTTTATGATAAACGGATCCATTTTGCAAGTTTGTTA11.3888888888888888No Hit
AGTTTGGGCTCCTAGAATATGGCGCCCTCGGGGCTTTCTATTTGATTGTA11.3888888888888888No Hit
AGGTCATGAAAAGGATTTCGATTTTTTCTTATTTTAATAATATAATGGAT11.3888888888888888No Hit
CTATCATTTCTTGTATACACATTACATTTTGTACACCTACGAGTATTCGN11.3888888888888888No Hit
TTCTAGAGCCCGCGGGCCCCTTATGCCCATCCATGCACATGCATCACATT11.3888888888888888No Hit
TGTATACTGTGTCCTGGTTTTGGGCTATATTGTGTTGTACTAGGTTGCTT11.3888888888888888No Hit
CATTAACACTTTATCAAACACCATCTTCTCGTACTCCACGCCATCAAACA11.3888888888888888No Hit
AGTCTTTCAGTGGCATGTTTCGGTCCTTTTCCCCATTACTTAGAAAAAGT11.3888888888888888No Hit
CAATACAACACAAGAAACCACATCAAAAATTTAAAAAAATAAAGAAAAAA11.3888888888888888No Hit
GGCTACAATTACTCCCCGGCAACAACGCCAAAAACTTGATGTGATGTTTT11.3888888888888888No Hit
GGTAGTTGGCAATAAGCTTGTACCTATTGGGCTTTTAAGTCATACAACTG11.3888888888888888No Hit
ATATAACTTAATAAGTTTAACACCTATATTAAAAAGCTCATTTATTTTAT11.3888888888888888No Hit
TAATTAGATGCTCAAAAATTATTTTTCCAAATACAACAATAATCTTAAAA11.3888888888888888No Hit
GAAGACACAAAGCCAAACACTCATATGGACTTTGGCTACACCATGAAAGC11.3888888888888888No Hit
CCCCTGCCCGGTCCGGGCGCGAAATGCCCCCTCGGTACCCGCCAGGGCGT11.3888888888888888No Hit
ATAATTACCACCGAGCGGCGGGTAGAATCCTTTGGAGACGACTGAGATAC11.3888888888888888No Hit
TCAACATACACTGCGATAATCATAAATCTGGATGTTGTTTTCTTGGTGAA11.3888888888888888No Hit
CTATATAGTGGGCTATCGTCGGCAATATATTTATTTGGTAATTTTCCATA11.3888888888888888No Hit
CAGATAAGATTAAAACATCAACCTTCAAGACAACCTAAAAAAAAAAAAGA11.3888888888888888No Hit
ATATATATATGTATATAATATTAAAAATTATTGTTAATAACATAATTCAA11.3888888888888888No Hit
AAAAAACGCAGAGATAAAACCCTAACCCCAAAAACAAATACAACTCAAAA11.3888888888888888No Hit
GTGTTAGATACATGTTACATTGCAAAGTACGTAGTTATTGGGCCATCAGA11.3888888888888888No Hit
CTAGTATACATGATATGCTATATTATTCATGGAGATGAGAATTGTCTTGA11.3888888888888888No Hit
CTTTTCGTCCTATGAACCTTAAGGTGTATCAAGTTTCATGTTTGATTTTT11.3888888888888888No Hit
TAGTTAATATTAAAATAATAATCAAATCATTCTTGACAGTAAAATATGTT11.3888888888888888No Hit
GACTATAGTCGCCACTTCATCAAACTAAGTGGAAATAATTGCTCTTCATT11.3888888888888888No Hit
CTGTTCGATATGCCAATAGTGCATTGTCAAGTTTTGCGGACCAATCCTTC11.3888888888888888No Hit
ATATAGTTCAAGAAAAAGTCGTCTCATTTCCTTACTTCTTCTTTCTAATT11.3888888888888888No Hit
ATCATGGTGGTTACTGTCTTAAGTCATGAGATACTCTTTTCACAAACTAT11.3888888888888888No Hit
AGATCAAGATCATTGTTCCTCTGGAACTTAGCAAGGAGAGCAAAGATCAG11.3888888888888888No Hit
GAACAATATGCCGGAGGAGTTCTAATTTACCAAAGCCATGGTGATGACAC11.3888888888888888No Hit
TTACATAAATTAATGGAATGAAAGGTACGGTGATATTACCAAACTGAAAT11.3888888888888888No Hit
ATCAAGTTCCTTAAGTACTCTTTAGCAGATTCTAGTGTTTCATCAGCCAT11.3888888888888888No Hit
CCTATTGAGAAGCCAGCGATGTTTGCTTTCTGTTTTAAGCCTCGAGGTTT11.3888888888888888No Hit
GTCTCTACCCGGACCCGATGAAAAAAATAGGATCACTTCTTATGGATTGA11.3888888888888888No Hit
TCTTACCTGTTGTAACCAAAACGAATTTAGAATTTCACTAAAACATAACC11.3888888888888888No Hit
CATAAAGTAACAACGTTTTTATAAAACATCCATATATTAAAATTGTAAAG11.3888888888888888No Hit
TGTTAGGCTTTACGGACACAAGATGCCATGTGGTATTTTACTAACTACTG11.3888888888888888No Hit
AAAAAAAAAAAATAACAAAATAAAATCATTAAAAAAAAAAAAAATAACAG11.3888888888888888No Hit
CCCAACCCAGTCAGCATAGTTTTAGGAGTCAGATCAGGCATGAAGAATCA11.3888888888888888No Hit
CTTTACCATTTCTAACAATCTGTTGCTAAAATTACTATTACTTATCCAAT11.3888888888888888No Hit
TCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTTATAAACTCTC11.3888888888888888No Hit
GTACCGGAGCACGTCAAAACCGGGCGGGTCCGGTTCGAGGTCGATCTAAG11.3888888888888888No Hit
CATTACCGTAAGGCATATAGGGGGAGGTCATAATCGTCTATAACGTAAAA11.3888888888888888No Hit
GTAAAAACCAAGAAAAAATAGAAAAAAACCAAAAACTGTAGAAATTATGC11.3888888888888888No Hit
GATATGAAAAAAGTAGGTGAGATTTCGCCTANTCCTAATCCTAAATGGAA11.3888888888888888No Hit
ACGCTCTACTAGTCAATTTCATACCTTTCATACCTAATTTCACAACAAAT11.3888888888888888No Hit
GATTTCTCAAGTATTATCATCAAACCATCATGAACCTAACTAACCAAATC11.3888888888888888No Hit
GGTGTCGGCATCTCATGTGTCAACTCACTGGTTGATCCCCCGTCCTTCGG11.3888888888888888No Hit
GGTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGAGGCGGGATGAAC11.3888888888888888No Hit
CTTCAGTATAAGCCGTACCCAAATCTTCTCCGGTGCTATAGCGTTTTTCC11.3888888888888888No Hit
CTACTATGTTCCGGGACACACATGATTTTGTGTCAAGGTGTGACTCCTGT11.3888888888888888No Hit
GCCTTGACGAAAGGTCGGCCACCTTTTTTTTTACGGAGAGCAAAAGGCCC11.3888888888888888No Hit
ATACTATTCAAAAAAAATAATTTTAAAATTACATATTAAAACATACCAAA11.3888888888888888No Hit
CCTGATAATGAAACCATCCTTCACAAGCTTCCTTATGTTCTGTCCTGTTG11.3888888888888888No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)