FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_037.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_037.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAATACTAGAATTTAAACCTAACTAGAGACTACATTAACTGTACCATATA16.25No Hit
GCTCTTCTGAGCAGTAATAGGTAGGGATGGCAGGATTTGAACCCGTGACA16.25No Hit
CCAACACAGAGCTTGGAGCATCCTTAACCTCAGGAACTTTCTGCTCACTC16.25No Hit
GATATATTTAAGCAGGTAGTCTCTGTTTCTCTGGATTTTTATCCTGTTTT16.25No Hit
TCTTGGATCTCCTTCTTATCGCAGAGCTTCCTATTAAAGAAAAAAAGACC16.25No Hit
CATCCTTTCCCACAATTCCATAGCAAAAAGTCAACAACACAATCCCATGG16.25No Hit
ACCTTGTGTCATGGTCCTCCAAACGACAAATCATGGTATCAAGATCACGA16.25No Hit
CATACATCATCATGTCTTGGAAGCTTGTCGGCTCTAAGTAGATGCTTGAT16.25No Hit
CAATCACTCTCATATTTAGTTTATCTATTTTTGTTCTTTCTAAATAAATA16.25No Hit
GCCTCTCACACCTCTTATCCCTATGGAGACTGATTTCTTTAGAGGTTTGT16.25No Hit
CAATAAAAATCACAAAAAACACTCAAACAACACATAAATCACTTAAAACA16.25No Hit
CTTGTTGAATCAGCTAAATATCATCTTATACTCCTGAACTACTTCCCATT16.25No Hit
CATATACAGAACGTCTCGAAATAATACCTGGGGCAGGAGATTCAATTAAC16.25No Hit
ACATGAATGTAATAAAATCTCGCGTAGGCAAACCAAAAAAAAAAAAAAAG16.25No Hit
GATATACTCGTATTTTCGCCTATATTTCATATGTTTTTGGCAGGGAAATC16.25No Hit
CCCCTTGATGTCTGACCCGCTACCTTAAAGTTCTTGGGCCTTAGATGCGG16.25No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)