FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_035.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_035.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGGAACTATGGATGACTATGTATGAGAAAGTCAAATAACTGATTATG43.9215686274509802No Hit
CCGCGAACCAAAGATCATCACTCACGGCGGGCCGGTTCCTTAGCTGGGAT21.9607843137254901No Hit
GAACTCAAGAAAATAAAGACTTTACCTTCAAGAATTTCAATCCAAATGGA21.9607843137254901No Hit
AATTGATTAGCTACACTTATGTTGTTATTATACTCCTTTTTTATGGAGAG21.9607843137254901No Hit
GAATTCTTTCTGGTTAAAGAATCTTTTTCTAGTTGCTCTGGAACAATTAG21.9607843137254901No Hit
GACTTGAGCAGAAAGATCAATCCGATGCAAACCTCCATTGGAGAACTCAG21.9607843137254901No Hit
TGGTTATCTCTATACCATCTGAGCCTCTCTTGCTCTATCGATGTGTAAAC21.9607843137254901No Hit
ATCTAAAATACTCAAAGATTCTAAGCATTTAGATTATTACAACTATATAT21.9607843137254901No Hit
CCATATTTTTAGACTCCGTATAATAATTTAGGCTGGAAGAGGCATGTGGT21.9607843137254901No Hit
CCACTCAACCACTTACTCGAGTGGTATGGTCGAGTGAGCTCTCTTCTGCA10.9803921568627451No Hit
CACTTGAGGTTGTTGTTCCTATTGTTGTTGCACAGACAAATGACACAGTA10.9803921568627451No Hit
GACCAGTACTGATCATAATCGGTCAAGNGCTCTTGTGGTTAAGTCTAAAC10.9803921568627451No Hit
GGTCTCACTCTTGCCGTCTTTGTCGCCCCTCGCCGTTGCTGTCAGTCACC10.9803921568627451No Hit
CTCCAGAGTTAAGCGTGCTTGGGCTGGAGTAGCACTAGAATGGGTGACCT10.9803921568627451No Hit
ATATATACATATGTATATCTATATAAATAGCTAGAGTTACCCCAAGTCTA10.9803921568627451No Hit
ATACAAACATTGTAAATTTAATCAAATTACACAAAGAGCAAATCTTACAT10.9803921568627451No Hit
CCAAATGGCTGAATGGATTGTTGTGCTTCTTGTCCCATACGAATCTTGAC10.9803921568627451No Hit
GCTCCAGTGTTTGCTTGCTTGACACGCCATTTAACAGTATGAAGAAACCA10.9803921568627451No Hit
TCTTAATATACCTCAGAACAATATATTTTTGTTACCGCGAGATATATTAG10.9803921568627451No Hit
ATAAAAAAACCTTTCGGCTTGTTATCCAGGAACTTGTTCAGAAATACTGT10.9803921568627451No Hit
ACACCTACAACCAAAATGGAAACCAAGAGTTTCGTGGTTCAAAAATGCTG10.9803921568627451No Hit
GATTGATCCTCAAGGCAACGAGGCTAGCCTCAATGCGCTTCACATGATCT10.9803921568627451No Hit
AAAATATTCTATCCCCTAAACGACGTAGAGAATTTCGAATTCTAATTTGT10.9803921568627451No Hit
GCGCTTTCATAGTAGGACGATGTGGGTACGCAGCCCCAAGAAATTCACCC10.9803921568627451No Hit
ACCCAAAGCTATGGAAGGACAAGCTAGCTTCCCGGGGAGACGGGCCATTC10.9803921568627451No Hit
CTATATATACATAAGATTTTCTAATAATTAAATTATATGTATTTCACTAT10.9803921568627451No Hit
GGTTTAAATTAAGATTTACCTCAAGATCATCCATACTTTGTTCTAAGTCT10.9803921568627451No Hit
GGGGTAGTCGAGTGGCTTCTCGAGTAGGCAGGCAGTGCTGAAGTCTAGTG10.9803921568627451No Hit
ACACTAGACTTAAGATTGATCACCTTAATTCTGGTATCATAGGAATGTTG10.9803921568627451No Hit
GATCATAGTCACATCGAAACAATATAATTGAAATCCTTTAAAATCTGAAT10.9803921568627451No Hit
CTTCATTCACAAATATCCCTGGAAGTTGGCTCAAAATCATTCAAACCTGA10.9803921568627451No Hit
AGTCTTAACTTCACTTTTGTATTTAAAAAGCCATGAATACCAAGAATTAA10.9803921568627451No Hit
GTGTTTAAATGGTCAATGTGTTCTTCTGCTAGTGCCGACTTGACAAGCAT10.9803921568627451No Hit
CCTCTCAACCAATTTCGAGTGCAAAGCAAAGCCTGAACATTTTTTGGAAG10.9803921568627451No Hit
GACTTATTATTTATTATTACTTTCTTTTTCTTCTTTTCTCTTTTTTTTTA10.9803921568627451No Hit
GCTCTAATCTCGAGTTTAAAACATTTATGGACCAAAAATCTATAGTCTAT10.9803921568627451No Hit
ATTGAACATTCAGAAATCAAATGTATTCTGCGAAGATCACATCAAAGTTT10.9803921568627451No Hit
ATATTAGTATCACATGAGTTGTGTAGAATTTCATTATTGAACTGTTATTA10.9803921568627451No Hit
ATACAACGGACTTGAATTCTGTAACAACCAGATGGACAAGCTATGCAAGG10.9803921568627451No Hit
ACATTGATTTATGTCATGACTCCACCTACTCACTTGTTATGAACTCTTTT10.9803921568627451No Hit
TTCTTTAACTCTTGGTGGAAGCATTTTCAGTCAAAATAAAAGAAGAGTAT10.9803921568627451No Hit
ATACAACTTCAGTAACACTGGTTTACCAGATCCTACTCTCAACACTACTT10.9803921568627451No Hit
GTTAGGGACTGAGCTTGGTTTTCTTCTTGCTCCACCGCAGCACGAACACT10.9803921568627451No Hit
TATATATATGAAAGAAACTCAAGTTCTTAGGTTTTTCATATGGGCATGTT10.9803921568627451No Hit
ATCTTATCCACTAAAGTTCTTTTGTTAATACCATTTAATGTGTGTCCAAA10.9803921568627451No Hit
ATAATATACTCACTGTCACATCTACTGTAAAAGGCACTGAATTTTGGCCA10.9803921568627451No Hit
ACACATCTCCAAAGATCGAATCGGATCCCGTCACTCTCCAGCTCCTCTCA10.9803921568627451No Hit
GTTTTAATGTGAAGAGTAATTGGTGTAAAAGCCAGAACTCACTTATATCA10.9803921568627451No Hit
ACATTGGTGGATTGGATCAGTTATGGATCAGATTATTCTTGTGTGCGGAA10.9803921568627451No Hit
ACCTTCCTCCTAACAAATCTTTTCTTATTTTGGCATTTTCTGATTTTTTT10.9803921568627451No Hit
CCACGAAGTACCGTGGGTATAATCTAGTTGTTTTTAAAAAGAAGTAACGA10.9803921568627451No Hit
GATGAAACTGGTCGATGAGCACAGAAAGTTNCATCGATCTGACTTGGTCG10.9803921568627451No Hit
CCTAAGAACAAATTTACAACTAACCGATAAGTAACATTTAGTAGATGGTA10.9803921568627451No Hit
ATATAGCGTTCATGGTGTGTTGGAATCAATCAGCCCTGTGTCTGTTGTTC10.9803921568627451No Hit
ATACAAGATGTTACGTCGGTGCTATTGTTGCGTCTATCAATGAAATTATT10.9803921568627451No Hit
ATCAAGTTATGAGTCTTACACAAATAATATGGATTGATTATAACGTTTAA10.9803921568627451No Hit
ATATATAACTGTATAAAAGCATGTCATTTTAGTTATTTTTAATTGGTTGC10.9803921568627451No Hit
GAATTCAAGCAAAGATAGCTAACTAAGACAATGCAATAAGGGGTTTTAGT10.9803921568627451No Hit
CTTCAAAGGAGGTCCTCGCTCTGATTAGTTTATCCCGCCTGCACTTCAGA10.9803921568627451No Hit
CCCTTTAACATACCTGGATTTTGCTTTAAAGCTAAACGAGTCAAGTCACT10.9803921568627451No Hit
ACAATGTAGCTACCAAAAAGTTTCTTCCACTAAGACAAGGCCCAGAAACA10.9803921568627451No Hit
TATTACCACAATCAAATTATATGCATGCAATATAAATCAACTAATTACTC10.9803921568627451No Hit
ACTCTAAGCATTCCATTAATTATGTATGAACGCTCAAACAAAAATACTTG10.9803921568627451No Hit
TTCTATTACTATCTATTACTAATTTAATTGGATCCTGAACCCTCATTTTT10.9803921568627451No Hit
GTACAACATTGTACATATCAATAAATTTTGGTTCGTGATTCAAACTGTGA10.9803921568627451No Hit
TTCATATATGATGTTTAGTATTTTTGTATAGACATTGCATGTATTTAGCA10.9803921568627451No Hit
GGATATGTGATGATAGAGATTTGATTAACCATGGCAATTAAATAAGGATG10.9803921568627451No Hit
GTACTGAGGAAAACTGATATGGTATTCGTTTAAAAATGGTCAGGGCCTGA10.9803921568627451No Hit
TAACTGAATATAATAAATATTCACATAATATATTATAAATTATAAATATA10.9803921568627451No Hit
GTGATCGAGTCTTTTAAGAAGGATGTGGCAAGCTTAGCAAGTGAAGTTGA10.9803921568627451No Hit
GGTCCCACACAATGCTCTTGCTGCTGTTACAGGTGATAATCCTCTTGCTG10.9803921568627451No Hit
GAATTAGGGTTTGGCTGAGGCAATTAAAATTGATCCTAACTTCCCCCCTA10.9803921568627451No Hit
GTGTTGGGTTAAGTCCCGCAACGAGCGCAAGCCTGGTGGTTAGTTGCCAC10.9803921568627451No Hit
ATACTATATAATTATTTTCTTTTTTTTTTTAGTCAAAAAAAGCTAAAAAC10.9803921568627451No Hit
TAATTGTATAAATAAAGTCTGAAACTTGTTAACAAAAAAATCAAACTTTC10.9803921568627451No Hit
ACCAAGCACTTTGGAAAGTTTAGATCACTTTGGGCAGAATTGGAAATGCT10.9803921568627451No Hit
CTCCTAGACGATCTAACGGCTCAGGTTAATAAGCTGAAAAAAGAAAACAA10.9803921568627451No Hit
CTTACTTTACTGGCCGTCGCAGCTGTGGTACACAAGCGAGACTTTATCAT10.9803921568627451No Hit
TTAACCCACTTTAACTTTCTATCTAATTGAATGAGATTTCTTATAGATAT10.9803921568627451No Hit
CCCTTTTCTCACGGGCGAAGAGGCAAGACGAATACGTTCAACCTTAATTA10.9803921568627451No Hit
CTGAACTGCTGATTCAGCGATGACATTTCGACTGCTACCGGCGTCAATAA10.9803921568627451No Hit
ATAATGCATAACATGATAATTGAAGATGAACGTGATTTTAACGCACCGAT10.9803921568627451No Hit
GCATTAAGAATGAGATAAGACCGAAAGACAGTGTAAACGGATATGCAAAT10.9803921568627451No Hit
ACAGTGGTGATCACGATTTCGAAGTACCTTTCCTTGGAACTCAAGCTTGG10.9803921568627451No Hit
ATCTCTGTGTGGTTCTAATGTGACTAGTACTACTATGCTTTAATCTTCAG10.9803921568627451No Hit
ATATATTATATAAATATAATTGCTCTATGAATATGATTTCAAAATCATAT10.9803921568627451No Hit
GAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCAC10.9803921568627451No Hit
GCTTCAACCAAGTGAGAGTGCTAAATCTAAATTCCAAGCAAGGTGCAGCC10.9803921568627451No Hit
GTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGA10.9803921568627451No Hit
GGTTTATATGACTTGATTATGTAATGCTAATTTGTGATAATTTGCCCTTC10.9803921568627451No Hit
GTCCAAAATGGTTTCAATGACTAGATTTTGTATTCGGTCCATATTGGAGA10.9803921568627451No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)