FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_033.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_033.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATCCATTGTTTATACCATTTTGTGTCATTTTAGGTCACTTAGAGA22.898550724637681No Hit
CTCATGAATGCAGTGCTACTCGGCGTTAGAGAAGATTAAAACTTTTAAAT22.898550724637681No Hit
AGTGAAAGAGATATACCGAAGTAGGATCCAAATGGTTTGTACAAGTACTT11.4492753623188406No Hit
GCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGGAGATTAGGTCT11.4492753623188406No Hit
TTTCTACAGCCACCTATTTAGAGATTTTTGGGAGAAGATGTCCAGACTCT11.4492753623188406No Hit
GCATTTGGCTCCTTCCAGTAAAGAGGTGAGGCATCTGTCGCGATGATCTT11.4492753623188406No Hit
AAGGCACCGTTGACTGATGCCATGTGTACTATGTAACGAGAGTGCTTTTT11.4492753623188406No Hit
GGAGGATTGGCTCGACCTCTTCCTACTACTTATGACAAGGGTAAACTCTA11.4492753623188406No Hit
CAGTTTCAAAATGCTATAACTAAATACTTATTACTCCCTTTGTTTCATTA11.4492753623188406No Hit
TGTATTAAAAAAATAAATTTGAAATTCAGATCAATGGACAAAAAAAAACT11.4492753623188406No Hit
AAAGATTTCATTTCAATTGGAATTTGGTTATTCACCCTGTACGAGGATCC11.4492753623188406No Hit
CATTAATATTTTAACAAAAAAAAATACAAATTTAAACGTTTTTTTAAAAG11.4492753623188406No Hit
AATCGTTACCCAATCACTACCACTGGAGCTAAGCCCATAAGCTAAATACT11.4492753623188406No Hit
GAGTTTGGATTTGAAGAAGAAAAAGAGGACAAAGTAGAGGTAGAAGTCGA11.4492753623188406No Hit
TATTCTCACAGTGATGCCGACGTCTGGCCGGACTGCCACCAGGGTAGATG11.4492753623188406No Hit
GGATAATCAGAAAGTTAGTTAAGAAAATTATTGATCCAATAACGGATGAG11.4492753623188406No Hit
GGTCCATATTGATAAGTTGGCTCTCATCTTGATCTGGTCATGCTTCCCCA11.4492753623188406No Hit
TATTTAGACTTNAGCAAACTATTGATTGCTTAGCTAGATTTGACACAAGA11.4492753623188406No Hit
ACTCTAGCATCATTGGTTGGGGATGCTATTGCTTCCACCCATTTGGAGAC11.4492753623188406No Hit
CCCTTGGAAAAAGAGGATGAATCGAAATATAGCAGCTACACCAAAACTAG11.4492753623188406No Hit
CTTCAATGATGGGTTTCCATTAATATCTACTGATCCATCTTCAGCATACA11.4492753623188406No Hit
GCTTCCGAGCCTTGATAATGTGTAAGCGCAAATCCCAAAGGAACAAGGCT11.4492753623188406No Hit
ATCACGCTTCATTGAAGCCGAAACTGCGAGCTGAGCACATAAAAGAAGTA11.4492753623188406No Hit
ATAAAAAAAAAAATTTTATACCTTATAAATAAAAATACCAAATAATTTAA11.4492753623188406No Hit
TTACACTATAAACGCCATTGTTTTGCTTACTGGTGGTGCCGTAGGCCTTG11.4492753623188406No Hit
CATTCAAAGTTTAATAAAAAAATTCAGACTCTAAAATAACAGGTAAATAT11.4492753623188406No Hit
GATCAGAACGATCCGGATTCGGACTCGATCACACCACTTGACCNTGAGGT11.4492753623188406No Hit
CTTTCATGTGTTGGCTCACCTGATTCACAGAAAAACATAGGTNAGGGCTT11.4492753623188406No Hit
CAACCATCCCTTGAACTTCTTTTTCTCTTTCTGTAACTAGATTCTTTAGA11.4492753623188406No Hit
CCTACTCAAGTCCAAACCATTAGGACCCCTTAAAGGTTCTAACCAGGGAG11.4492753623188406No Hit
GGTCTCCTGAAACAATGCAAATCACAAAGGAAAATCAGTAGCAGATTATT11.4492753623188406No Hit
ATATCTGTGACCAGATCGATACAAGTTTCACCGTCTGGATTTTGCCATCA11.4492753623188406No Hit
CAACTTACCACTATACTACAATTGATTAGAAACTGTGTATTTCGTGTCTG11.4492753623188406No Hit
GGAGTTGAAAACCTCCTTCAAGAATTGTCTTTGATCCAATCCGTAGGAAT11.4492753623188406No Hit
CTATAATGCTGCTTCTGCATCGATCCACCTCGAATTTCAAAGTCTTGGTT11.4492753623188406No Hit
CAATTTATGGTGTATGTAGNTAACCCATTAAACCTAAAAGGTTCCAAGAG11.4492753623188406No Hit
GTTCCAATACCCTGTTACAAAGGAGTCTACAAAAGGTTAAAGCTGGGAGA11.4492753623188406No Hit
ACCCAATAGTAGACAGCAGAACTGTAGATAATCTGCAAAACTGTACACAA11.4492753623188406No Hit
TTATTGGACCGCGTGTATTTTTCTCTCTTATTGGCTATACAAAAAAGTCA11.4492753623188406No Hit
CTTGATCGAGTTCTGCGATGATGGACCTCCGATTCACAACTATATATCTC11.4492753623188406No Hit
AGGTATGGGTCACAATTATTACGGGGAACCCGCATGGCCCAACGACCTTT11.4492753623188406No Hit
GTTTCGTTCTTATCTTACCGTGATCCCAACTTATTGAAGACACTAGACAT11.4492753623188406No Hit
CTCTCATGACTTTATTGTTGTTTCTCTATTAGTCATCTTATCTGCATTTG11.4492753623188406No Hit
AGATACTTCATCTTTTTTAAATAATCGCATTGTATTGTCAGAAGTACTTG11.4492753623188406No Hit
GGAGTTGAAAGAGTACCAATAAAGTTAGTAATGGCTGGTTTGTTGTAGTG11.4492753623188406No Hit
TCTATACTTCGGTTTACGATCCTCAGTTTTCATCTTTACATCAACTGCTA11.4492753623188406No Hit
ATATAAATCTATAACACAAAAAATCTAAAAAAAAAAATATCATAAAAAAA11.4492753623188406No Hit
ATCTAGATACTTATAATAAAAAAAAAACCATAATTAGTGTTATATGTGTA11.4492753623188406No Hit
AGGTTGTTCAGAAATCTTCTGAAGTCCAGACAAAAGAGTATGAAAAGGCT11.4492753623188406No Hit
GGAACGGAAAAATCCCGTTGAGAATGAACTATGGGTTCTAAGCNATCTCT11.4492753623188406No Hit
GTAAATAGAGAGACATACTATACCCACCACTTTTCATGAGCCTTTCCATA11.4492753623188406No Hit
AAGTTACACATCCTGCTAAAATTTTACTTATCAGAAAATAGAAAAATAGT11.4492753623188406No Hit
GTGCATTTGGTCTACAAAAACAAGAGACTGCATTTTCTTGAAGATGGTCT11.4492753623188406No Hit
ATGTTCAAGTTCAACTAGGAGATGACAAGCTTTACCATAAAGAAGATGGA11.4492753623188406No Hit
GATTTGAACCAAAATCTGGGGCATACCAGTCTTTTCTATTATCAAATGAT11.4492753623188406No Hit
ATATGGAGGAGTTATTCGTTTGCTACCAAAAAACTCTGTGTTTTCGTTAC11.4492753623188406No Hit
CACTCTTTCCATTGACCGTAGAGAGCGTAAGCGTCCTTGTGCCTTTTATC11.4492753623188406No Hit
GTTAAAAATTCTAATATAAAAGATGACACCTTAATAGATTGATTTCAATT11.4492753623188406No Hit
TATTTCCCCACTTACAGAGATTCGTCCTCGAATTTTATGTCACTGTCCAT11.4492753623188406No Hit
AACATCTTTTCAATCGAAATCCCAATCCCAAGCCAAGCTTTCTCACCCGA11.4492753623188406No Hit
CTTGTAACAACATTCGATGCATTAAACCAAAAGGTGCTCAGTCATTAGGT11.4492753623188406No Hit
GCTAAAACTCAGACTAATTACTCTAAGACATAAAAAACCATCTTGTAATA11.4492753623188406No Hit
TCTACTGTACTTTATTCTGTCTAAAGTAAATTGAATTTAGAAAAAAAAGT11.4492753623188406No Hit
CTAATGGTGAATTTAGAATCCCCGGCAACGGCGCCAAAAATTGACAGGGG11.4492753623188406No Hit
GAAATAAATCATGTCTCCAATCGCATCGTGCTTTTCTAGAAACGGTTGGA11.4492753623188406No Hit
TGTCTGGAGTCAGAGAGTAACAACGGAGGGTCAAACAACAAAGTTTGTTT11.4492753623188406No Hit
ATATATGTGTTTGGACAATGGACAATTTTACTTGTAGTAACTAAAAAGAA11.4492753623188406No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)