FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_032.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_032.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTTTGGAAAATATATTTTAGGTTTTTAATATATATATTATTTGTATT11.0869565217391304No Hit
GATTTCATATTTGATGGGTGTACTATACTTGTTCATGGGTTCTCCAGAGT11.0869565217391304No Hit
GTTCTGATGGTGTAGCTGTTGCTCTTGGAGCAGCTGTTGCAGCTGGATTA11.0869565217391304No Hit
TGGCTACAAAGAACTCAACCACACTTGCTTTATTCCTTGTGATCAATCTT11.0869565217391304No Hit
GGGGAGAAAAGGTGTCTTAGGTGCCAACCGTTGGACTATCTCTAGTAAGT11.0869565217391304No Hit
CAACAAAGCAGCCGCCCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCG11.0869565217391304No Hit
CATGGTCCTTAGTATAATCATTGGAGTCTAGATTGAGAGGAAAATATATA11.0869565217391304No Hit
GGAAGACGATGTTCTTATCCAATAAGAATCTCACAAATTATTTGCATATA11.0869565217391304No Hit
ATATAAATCTTCAACGTTGTTGAATAGATTAGAAAGTTCTTCTTTTGACA11.0869565217391304No Hit
ATCCTTATCCAATTCCAAGGAAGTCTAAAAAAGAGATGGAGGATATGAGA11.0869565217391304No Hit
GAGTAACTCTCTGCTATGTCTTGTTGTGCATCCATATAGAATCACTAGGT11.0869565217391304No Hit
ATATTAGAGACAATCATATTAGTGATAAATATGACTATGATGATGAAAAC11.0869565217391304No Hit
GTATATATATATATAAGTCTTGGGGCGCAAGAGATCGGCTTCTAGGGCTG11.0869565217391304No Hit
ATGTAAAAACTTAAAAGGTAAAGAAAAAAAAACAACTAGTAATGACAATC11.0869565217391304No Hit
GTATACATGGTATGCAGAAGTAGCTGCACCANAAGTGAAATTCTTGGCAA11.0869565217391304No Hit
CAAAAAAACAAACAAAATAAGATCTATAACCATCTTATTATTATATAGTA11.0869565217391304No Hit
GTCAAGAATCATGCTTATTGTCATTAGTTGATTTTAGTGTAAAGTTTGTT11.0869565217391304No Hit
GCTTGGGCTTGTTGAGCTTACTCGTCCTTGATCTACTACCAAGTTCTCAT11.0869565217391304No Hit
ATAAAAATAATTACTTAAAAAAAATAACATTATCTACAAAAAAAAATAAA11.0869565217391304No Hit
TCTCTAATGTAAACTAAACTAAATTAAGATTAATAATAAAAAAAAATTTA11.0869565217391304No Hit
AGATTTGAGATTTCGTTCAGATAGATTTTAAATATAAGCATTAACTATTA11.0869565217391304No Hit
AAGACTTACTGATTTCCAACAGTTGAAAGAGTTTGTCCTGAAGCTGGTCT11.0869565217391304No Hit
TAAAAAATTAAACAAAAGTAAAAAACTCAAAAAAAAACATATTAAACTAT11.0869565217391304No Hit
GGTTGATGCCCGGCGTGAGTTCGTCGGCGAACTGCTTGGCGGCCTCCTGC11.0869565217391304No Hit
GTAATTAGGTATGGATGATGTTTATTATCTAAAACACAAAAGCACATTAA11.0869565217391304No Hit
CTATAAGTGGTTTATTTTATGTTGTGTTCTATAGTATATTACTTTTTTTT11.0869565217391304No Hit
GTAACAAAGCTACTTTGCCACCCACTGCTACTAACTCACNGCCCCCCCAA11.0869565217391304No Hit
CTTTTGCTCCCGGAGTAGCCAAATAGGGCTTAGCGGATCTTATTACTATA11.0869565217391304No Hit
AAATAAACATTTAAATAACAAAACACAAACCCATATAAATTTAAGAAATT11.0869565217391304No Hit
GTTAAAAATATGAAAAAGAAAAAGGAGAGAGAGACGATTATTCCTACATA11.0869565217391304No Hit
AATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGT11.0869565217391304No Hit
GGTCTGCAGCACGCGCCTTAACGGCGTGCCTCGGCATCTGCGTGCTCCGG11.0869565217391304No Hit
AGCATGTTAATTGTTTTTTAACAAAAATCATAAGTAAACTAAAAAAAAAA11.0869565217391304No Hit
GAACCGGATGATGCGATGACTCGAGCGACAAAGAGTAAGGATATTTTTGG11.0869565217391304No Hit
GAACATTACTTTTTAAATAGATTTTACATATGAGTTTGATTTTGTTAAAT11.0869565217391304No Hit
CTTTCTATATTTTTGACGTACTTAAATATTTGCTGTGGGTGTCAAGAACC11.0869565217391304No Hit
AACATTGCCCAAGGTGTTTGTGGGACAAGTGGATCGGCTGAAGAGGATTG11.0869565217391304No Hit
GTCATAACCAAGCCCAACCCAATATTGACACACGTAATATTAGCTCACGG11.0869565217391304No Hit
ATACTAATGAGATACAAAAAATAAAAAAATATTTTTTATCAATTAAAAAA11.0869565217391304No Hit
GCATACATCTCCTGTGTATAATGCTTTGGTAGACTTGATTGTACGTGATG11.0869565217391304No Hit
CAGTAAAATGATCACCTGAGAACCCGGCAGTACACTATCACAGGTCTGAT11.0869565217391304No Hit
GTTCTTCCCAAAGTAAAAGACAGCAAAGATAAGGAATGACATCCAAACCT11.0869565217391304No Hit
GTATACAGAGTCCTCCCTCGAATGTCATATTCACAGTAGGGAGGGACCTT11.0869565217391304No Hit
GTACTGAAGAGATGCAAGTCTACCAAGATCAGATGGTACCATACCGGTTA11.0869565217391304No Hit
ATCTATGCAGGGATGGCCTCTGTGCTTAAAAAGAACGAGCAATTGTTTAA11.0869565217391304No Hit
GTTTTGAGTTATATCGAAATCCTTAGAACTCATTAAATTACTACGATTCT11.0869565217391304No Hit
CTATAGATGATGAGAAGATTCCATTGATACAGAGCCAATTCCAATAGACT11.0869565217391304No Hit
TGCATACGTAGCCGAGTAGTGATCGACGGAGAAAAGAGTTGAGATATTGA11.0869565217391304No Hit
AGTGTAAGAAAGCATGGATATTGCATCAACATTTTGGAGCTTATATTGAC11.0869565217391304No Hit
ATAATAAACATGATGCTAAATACATAAATAAATCTAACCTAAAACACTAA11.0869565217391304No Hit
ACAATGAAAAAATGCTTGCGATGTACAAACATTAAAAATTCACTATAGAT11.0869565217391304No Hit
TTTTTACATCTTCGATGATACCCTAATTTACCCTCCACCGCAGATTTATC11.0869565217391304No Hit
AAGTAGCAGGATTTCTTTGAGGCTTGTTGATCCGGATATGTTCTATGATG11.0869565217391304No Hit
TCCTATATCTTCAGGGGTATATCTGACAATAGATGTATCTCCTACCAAAC11.0869565217391304No Hit
GGACAACTCTGGAAAGTGAACTGGGCAGTTTTTAAATCAAGTCTAAAGTG11.0869565217391304No Hit
ATGTATTTAATGCTAAAAATATAGAAAAACAAATGCATTAGAGATATACA11.0869565217391304No Hit
CATTATATAAGTGTTTGAAATAGGTTTCTAGCCAAAAAAGATTTACTATA11.0869565217391304No Hit
TACCATCACAACAAAACTTAAATAAAATAAACATTCACATATTCAAGCTT11.0869565217391304No Hit
CACTTTCCCAGCTTTATAAGGTTGTTTGTTACAAGAAAGTTACCTCATCA11.0869565217391304No Hit
ATACATACTATTAAAAAAAACATTCTTAATAAACAGAATAACAGTTTTGA11.0869565217391304No Hit
TTTCAAACATTGTGGTTAATGATGATGACAGTGTATTTCAAGGATAGATG11.0869565217391304No Hit
GTATCGATTTAAGAACAGCCTAATTGACATAGGAGCCAGCGTTAACATGA11.0869565217391304No Hit
AACTCACTCCGCCTTTGATTCGTTGGTTTTCTCCTAATTGGTTTTTGCTT11.0869565217391304No Hit
ATCCTTCATCAGTGGTTGTGAATGACTGATTTTTCTCAATCTTTTCGACC11.0869565217391304No Hit
GTAAGAGACATTACTAAATTAAAGATTCAGTTAACCTTAATACAAAAATA11.0869565217391304No Hit
GAAGAAATACCCTCTTCCTCGGATAGACAAGTTGTTAGATCAACTACGTG11.0869565217391304No Hit
CTTCATTTTTTGGCTTTGTAATAGTCAATAGCTGAAGAGAGTAGATTACG11.0869565217391304No Hit
TTAAGAGGCTTTGGCTTAGTCTTTTGGTGGAACCTCTTTTAAGTAAAGTC11.0869565217391304No Hit
AAACAAAAGATTTCTTCAAGCATTACCAAAACAGATATTACTTTCAAGCC11.0869565217391304No Hit
ATTCATATTTTTTAAAATTATGGGGTTTTGGCCTAATATTTAATATGTTT11.0869565217391304No Hit
AATACATAATTATAAATATAACAAACAATCATAATAGTAAAAAATCGACA11.0869565217391304No Hit
GGTCAAGCTCAAGGTAGGGTTCTTCACCATATTCATCATAATGAAGATCA11.0869565217391304No Hit
GGTCTATACAAACATATTACATGTGTATTATTAGTGTCTCGTAAATTCCC11.0869565217391304No Hit
ATGTTGTATGGTTGAAGGCACAAAGAAAGAGATTAAAACGGATTGTAGAT11.0869565217391304No Hit
ATATCATGTTATCTTTATTGATCCCTGGGCCTACTGCACCAAGCAATAAC11.0869565217391304No Hit
GTAGCAGATAAAATAATATCTCTGCCCGGCCCGATCAATAGTTCAAGTCA11.0869565217391304No Hit
GTATGGACGTCCCCTATTAGGATGTACTATTAAACCAAAATTGGGGTTAT11.0869565217391304No Hit
CCACCACTTCCCCTTTGCCACTGATAAGGATCCGACAACTCGCATGCCTT11.0869565217391304No Hit
ATTCGCAGCATTATGTTCGATAAAAGGAATTAGGGAAGCTCCAATGGAAA11.0869565217391304No Hit
CTATAGCTCACCTAACTTGAGCTCGACAAACTCATCAGCTCACTGTTAAC11.0869565217391304No Hit
ATTAAAGTTTTATAAAAAACAAAAAGCAAAAATAATTATATAGACCTATT11.0869565217391304No Hit
GATAACATCTTTCATTTTATTAGAGTCAAAAATTTGTTTTCAAAAATTTG11.0869565217391304No Hit
ATTCCATATAAAAAACATAATTCAAATAACATAAATAAATAATTAGACGG11.0869565217391304No Hit
CTTTCTGCTGTTAAAAGATTAATACATGGTCGTGGTTAGTTATCTCTTCT11.0869565217391304No Hit
GTTGGAATCAGCTGCTCAACAAAAACACATAACACACAATTACTAAACTA11.0869565217391304No Hit
TCTACTCGGTCTGTGCCCGCGTCAACATGCTCGGGAAGCTTGCTCGAACA11.0869565217391304No Hit
CCTAAAATAAAATACATCGACAACACCATATCAAACATTCTAATCAAAAA11.0869565217391304No Hit
CGACAAAAGAACAATGCACTTGATCAGAAGAATCAAGTACACGGAGCAAG11.0869565217391304No Hit
ATGTGTAGTTTACTAATTACTATCCAATTTGTCAATTAACCAAAATGATC11.0869565217391304No Hit
ACGTAAGACTGGGGTTTCGTTTTTTAATACTATTATCCTTTTTTCCTACT11.0869565217391304No Hit
CTTCTACATTAATTTAGTTTTCTGTTTGCTTGAGGGCAAGCAAAAACTCA11.0869565217391304No Hit
GCACAAAAAAACTCCCCCCACAACACCTCTCCTTCTGAGTTCTGACCACG11.0869565217391304No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)