FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_029.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_029.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length151
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTTCCGAAACGTTCCTGAATCTCTACCACCATTGTTCGAGTTCATCGA111.11111111111111No Hit
TAATTGATTGTCTGATAATGAGCAACGAATATCCGTCTTTCTGCTAAACA111.11111111111111No Hit
AACATATAGAGCAAAATTCGAGAAAAAGGTTTCGAATGACTTAACCATGA111.11111111111111No Hit
TTATAAATGTTAAAAATTATATAACCCATATTAGGGGTATAGATTTTGTA111.11111111111111No Hit
GATTTTAGTTAATTAGTAGTTTAGTGATTTGAACCTGTATGAATGTGTAC111.11111111111111No Hit
TCATAATTTTGGTGAAAAATGTTTTTACATCATTATGGAGAGTTGAATAG111.11111111111111No Hit
AAAAAAAAACACTTCTACAACTATAATAAAATTATAATCTATATACTCTA111.11111111111111No Hit
TCTCTTAAATCAGTGCTTGGTGATCAAGTCAAGCAACATGCATTAAGTAA111.11111111111111No Hit
TTCATAGACAGCATCTCGTTCTTTTATCAGAGGTTCTACCAATTGATATG111.11111111111111No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)