FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_024.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_024.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTTGTATAGTTCACAATCCCTTGAGTATTGGGCAAAAGGCTCCTTAAT12.2222222222222223No Hit
GCTATATACATACAAATAAATACATTGACTTGAATTTCATATATCGGCCC12.2222222222222223No Hit
TATCATCACTGTCCACATATCGTCTTATTGTCCTGTCATACTCCTCATAT12.2222222222222223No Hit
GATTTATTGTAAACAGATTTGTGACATATATTTCTCATGCTAATTTTGCT12.2222222222222223No Hit
TAGTTGTACTTTTCTGGAAGCTAGTTGTACCTAGTTGAACAAATACAGTT12.2222222222222223No Hit
TTAGTAGGCTGGCTATCTGAATTAAGTAGATAATGCTCAATCAATGAAGT12.2222222222222223No Hit
TTGTTATTAAGTTCATTTAGTTCCTGAGACAAAAAACAAAAATAGAAAAA12.2222222222222223No Hit
CTTATATCCTCATAATTTTAGGGTTTAGAGTTTAGAATTTAGAGTTTTAA12.2222222222222223No Hit
AATAAGAATCACTCAAAAAATAAAAACAAAGATTCATAAAATAAAAAATA12.2222222222222223No Hit
ACAAGTAACAATAAAAATATGTGTATGAACAATTTCATTTCAATCCTCTG12.2222222222222223No Hit
CACCAGCCCAACTCGAGACCAAAATAATTTATTAATTTAGAGAGGTTATT12.2222222222222223No Hit
ATACAAATCCGATCATAGATGTAGAAAAAAAAAATAAACACCAAACCTTT12.2222222222222223No Hit
GTAATAGCTCTGGTTGTTCGCTGTTCAAGAATTCTTGTTTAGGCAGTTCA12.2222222222222223No Hit
GTACAAAGGCTCCTGAGAAGGATAATTTTGAGACAGATAATGTGGAGAAG12.2222222222222223No Hit
TTTTTATATTTGATATATATTTGAAAATTTTTTTACCTAATATAGTTTTT12.2222222222222223No Hit
ATATCTAAATGGGTCCCACGCTTCGTTAAGATATTTTTTTCTTTCCAACT12.2222222222222223No Hit
GTTGTGGAGATATAGAGTGATCTCTCCCATCNACTACAATTTAATTTATA12.2222222222222223No Hit
CTGTTTTATTTGCAGTGATTGTAGAAATTCCATTTTCTCTAATATTAGGA12.2222222222222223No Hit
ATTTGGTATTGTGTTGATTGTTAATTTAGTTAGATTTTTTTGGCTTATAG12.2222222222222223No Hit
CCATAATTTAATCGTTTATTTAGTTTTTTTTCTTTGGAATATCTCGGGAT12.2222222222222223No Hit
CCTAAAGAAGCCGACTTATACCGATGCGAGTCATGAAATGGTCAAAGGAC12.2222222222222223No Hit
CTTCTAGACAATACTTACATATTCCAGCCTATACTAACACATATTCTAGG12.2222222222222223No Hit
GTTCAATAACAAGCTCTCAATTATCTACTTATAGTTTTTAGAGAATTTGT12.2222222222222223No Hit
ACAGAGAGACGGCTGAGAAAATGACAGAGTATATAGAACTCAACACGATT12.2222222222222223No Hit
ATTATAAAATTTTATGTCATATAGTTTTTGCTTTCACAAAAAAATTACTT12.2222222222222223No Hit
GTTAATTGGGTTCGACAATTTTTAATAAGGAAGGGTTATTACTGGTCAGT12.2222222222222223No Hit
AATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGCTGACTGTT12.2222222222222223No Hit
ATCATATATGTCTTTCTGCTCAAGTGTCAACATTTGAACCCACTCCTTTT12.2222222222222223No Hit
GTTTTGTCTTGGTACCAGGTAAACTAAGAGATAAGCTAGACGCCAAGAGC12.2222222222222223No Hit
GTGTTGCACAAGTAAATTTTATTCTACAACAAAATATATAATATTTTACA12.2222222222222223No Hit
AGCATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTA12.2222222222222223No Hit
CAAGGAAGCTGATTGGCGGGATCCCATTCGGGTGCACCGCCGACCGACCT12.2222222222222223No Hit
GTCTTCATCAATGTTGTCCACCAACACCCCTTGAACTGTTTGCTCGGAAA12.2222222222222223No Hit
GTCGGCTTCATCCCATGTATGATTCCTTTCCATAGCCCCAACCTCATATC12.2222222222222223No Hit
CAAGTATTTTACCTTTTGTTTTTGCTAAAATCCAAGTATTTTACTTGGAA12.2222222222222223No Hit
CAGAAAAACCTAAAATATTTCCCCCAAAACCCGATTAGAAACTCAAATAG12.2222222222222223No Hit
CCTTTTTATTTCTCATCAAATGAATGGCATCTTCTTCTGGAAATACTAGC12.2222222222222223No Hit
GTTATCTACAATCTTTTTCTTATCTAATATTTCTTTACAATCTTTTCTTT12.2222222222222223No Hit
GATGAGGAATGGAGATGAGATCGAGAGAGGAGGGATGGAGAAGACAAAGG12.2222222222222223No Hit
GGACGCTTCTCCAGACTACAATTCGAATGCCAAAGACATTCGATTTTCAA12.2222222222222223No Hit
CCCACCAGATACATTTTCCGGCTGACTAGGTACGAAGACAGGTGTTCTCT12.2222222222222223No Hit
CTTATATATGATGCAAGATGGATCTTGTTCTATCGTTGATCAGAGATTTC12.2222222222222223No Hit
ATGTATCCAAATATATGAAAGAAGTCTTTATTTATAGTGAATAAAAAGTT12.2222222222222223No Hit
TATGAATAGATTGAGAAACAAGACACAAGAATTAGAAAGCAGATCAATCA12.2222222222222223No Hit
ACTTCTGAATGTTCCGGTAGGCTCTATTGATCTGAAACTGTTTTTCTCCC12.2222222222222223No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)