FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_017.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_017.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCTACGAGTCTGCTGACATCATGGGACTCTCCCACAGCCCTCGTGTT11.8867924528301887No Hit
GATATATAAAGTCCAGAATGCTATTCCTACTTCTAAATGCAAACAATACG11.8867924528301887No Hit
GTCCTCCTCCTGTCAGATCAGTGGCGTCATTAGNTTCTCATAGTAGCGCA11.8867924528301887No Hit
TACCAGTAGGTTTTGGGCCGAATTCCATAATCCTCCCATGCCCGAAACCA11.8867924528301887No Hit
ATCGATTCCTTCTTTTGATCAAGGACGTCAAGGTCGTTATGGTGGTCTCG11.8867924528301887No Hit
CTTATAACTGTGTTTAGTTATTTCTTTCATAATGGCTAGTTCGTACTTCG11.8867924528301887No Hit
CACCAGCTCTTGTCACTTANTTTAAAACCAAACATGAGAAGCTGGAGATA11.8867924528301887No Hit
TTTGTATGTATTCTAGGGTGGTGGAACCCATGGTGGTTGTGATGGTGGGG11.8867924528301887No Hit
AACGCCGGAAGGAACTAGAGTTCGAAGTCGGGGACTTAGTTTATCTTAAG11.8867924528301887No Hit
GAGAAGTACTTAGCCGAAACATTTGGAAACTGGGCGTCGTTTAGACCTCA11.8867924528301887No Hit
CTTGGCAACAGTGGAGGATGGGAGCACTATCAGTCTGCTAGAGCTAAGAG11.8867924528301887No Hit
GAACTATCCTTTGCTCGCCAGCCCATGTGAACTCCAGAGATTGGGCCTTC11.8867924528301887No Hit
ATTCCTCCCGGAACAAAAGGGTCAAAACCCTCTACGCCCCACGCCGGGTT11.8867924528301887No Hit
GGTTTCGTTTATACTTCTTTCAAATGTTATTATAGTTTGGATGATTAGAG11.8867924528301887No Hit
GAAATAGTTAGAGATTAACCTTACACATTGGGGAGACGAGGATAAGACCA11.8867924528301887No Hit
GCTTTTTGCTTATTCCAATAAGTTTGTACATTTAATTTGGAAATATTCAA11.8867924528301887No Hit
CTACAAAATAACTCGCTTAACATTATTTGTGATGCCGTCGATGAGTATCC11.8867924528301887No Hit
CCATAACCTAATATCATCACAGAGTATACTGCAGAGCAATTCTTTTTGCA11.8867924528301887No Hit
GCCCGCAGTAGCAACGGAACCGGGGAAAGTATACATAAGTATACAGAAAA11.8867924528301887No Hit
GTCCAATAGGATTTGAACCNATACCAAAGGTTTAGAAGACCTATGTCCTA11.8867924528301887No Hit
CAGATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCAAGGCTCGA11.8867924528301887No Hit
GAGTAACAATGTATTCATCTGTTAAGAGTTGTTCAAACAAGACCAGTTCT11.8867924528301887No Hit
AGCTGTATCAATCTCCTTTCCGCAGCCAGTTTGATGTCAAAGTTCAGCAA11.8867924528301887No Hit
GGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATA11.8867924528301887No Hit
GTATATTAATATTATATAGATGTAGACAGATTGGATCATTCATCTTTACA11.8867924528301887No Hit
CATTAGCAACTACTTATCTGCGACACATAAACTGTTGTTTCCAGTGAAGG11.8867924528301887No Hit
ACATATGATTATATATTATTAAACCTAATTAAATATTCACAACATGGTTC11.8867924528301887No Hit
ATCAATACTCTGATGCGAGCGAGTACTCTTCTAGCCTCTCTTCTTCTCTC11.8867924528301887No Hit
AAAACCCATTATCAATCATCCTACAATCAATTAAGTCTGATTAATTAAAA11.8867924528301887No Hit
AATCAGGAAAATGTATAATTAATGTAAGGTTATCCATCTGGTGTGCCTGA11.8867924528301887No Hit
ATATATAACTGGGATATAATTATTTAAATCAATCTTCTATGCGTGAGTTA11.8867924528301887No Hit
AAATCTCCATCACCCTCACCTAGTTCCCATTCCAACCATCACCATCACCA11.8867924528301887No Hit
GGCAACACCTTTCAAACCAGAGCTGAAGTACGGTATGGCCCCAATAGCAT11.8867924528301887No Hit
AGACTCTTCAACAGCGTCTACAAGCTTTGATTGAAGGAACACACGAAGGC11.8867924528301887No Hit
GCAAATCTCAATATTATTAACTATAAAAACCAATGTTCAAACAAACACCA11.8867924528301887No Hit
ATTCTAACCCTTCTTGGGGGATTCCATCCACAAACGCAAAGTTTATGGCT11.8867924528301887No Hit
CCATATGAGAGAGCTAAAAATAATATATCCGATAAACTTCTCCATTGCTT11.8867924528301887No Hit
CACAAGTATTTAATATGTAAAAAAAGAATTATCCGATTCCAAAGTTATTG11.8867924528301887No Hit
GTTACGTGTTGNATAAGATTAGTTTTTTTATGCAACAGTAACTCTATTAT11.8867924528301887No Hit
TTATTATCCTTATATCTGTTTTGTGCCAAGATACTTTGATGATTCTAACT11.8867924528301887No Hit
CATTAAAATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCA11.8867924528301887No Hit
GTTTTAAATCATCCTATAATATATAAAGTTATGAAAAACTCAATCTTTTT11.8867924528301887No Hit
CTTGTGATCAAGACGTCAANGAAAGGAGCCGCAGCCACCGCAGATCGGTT11.8867924528301887No Hit
CTGCCTCCCATTGCTGGAACTAGCAATGCAGGTATAAAAGCACTTGATCC11.8867924528301887No Hit
CATTATGTCCTCATAGATTGCTGTTATCTGTTTCTTGCACCGCTCAGGGT11.8867924528301887No Hit
CTTCAGTACAAAAAATTAAATTCGTTTTACAAAAATAATAAACATACAAA11.8867924528301887No Hit
GGATAAATGAAAAAACAAAAAAAAAGGATGAAAAATGATTTTATCCCACA11.8867924528301887No Hit
AAAGTATGCTGTGTGCACATGTTTGAACAAAAAAGAAAGCAATAATGCAC11.8867924528301887No Hit
GTTTCCAGAATATCGATTGGGAGATTGTTACTTCCTCCTCCTCCTCCTTG11.8867924528301887No Hit
AGTAGTTGAAGACTATGTATGCCATTGGTTCCGGACAGCTATGTGGAAGA11.8867924528301887No Hit
GGTGATATTTTACTTGAATCTTATTGAATTTGCAATTGGATCTTAATCCA11.8867924528301887No Hit
TACACACCCAAGCCATAGTTCATGAAAGAGGCGTCTTAAGTCNCCAGACC11.8867924528301887No Hit
TCCTTACTGTAACCAAATAGAATAGCACTAATCACAGCAAGATACACGAG11.8867924528301887No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)