FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_016.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_016.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGTAAACCGATTGTGTACCACCACTGATAAACACCAGAATAAGCTCT14.545454545454546No Hit
AAAAAATAAAACTAATATAAATATAAATAAAAAAAAAAAAAATAAAAAAA14.545454545454546No Hit
CGTTTCCATAAATACATAAGCATAGATCCAAGGACATATGCATTGGTTCC14.545454545454546No Hit
CTCATCAGAATGTCCACTTTAGCGTTAAGCTCTTCTGTGATCTTATCACT14.545454545454546No Hit
TCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACC14.545454545454546No Hit
AAATCATTCCATTCTGGATTCCTTTTTCTATCAATGCTTCGGCTTTCTAA14.545454545454546No Hit
CTATTCAAACTTTCCAAAGTTTGTCTTTTCATAGCGCTCAGCTTCGTCCA14.545454545454546No Hit
AGTTCCCCATGGAGAGCACCGGTGTTGTTTGTGAAAAAGAAAGATGGAAG14.545454545454546No Hit
CAAAAAAAAAATATAAATCAAAAATATTTGTCAATGAGATTAAATTAATA14.545454545454546No Hit
GTCTTTGGCTTTGTGTCTTTTAACAAGGATACAATTCTTACGCCTTTAAG14.545454545454546No Hit
GTCAGAAAGATGGTGATATCTTGGTCGGGCGACGGGTCGTGTGTTTGATG14.545454545454546No Hit
ACCATGGGTCGTTTCTCCCACATTGTCGACACTTTTCTTGAGCAGATTCC14.545454545454546No Hit
ATCTATTCAAGTCATATCTAACAAATCTCCACCTTGACTTGAATCCTTCA14.545454545454546No Hit
GTTCCTATACAGTTCGAACTATTTATGGAGTCTTAGGAATAAAAATTTGG14.545454545454546No Hit
AAATAATAAAGAGTAATGGATAATTAAACCCAGCCCATTAAGTTTCATAA14.545454545454546No Hit
ATTGACACGTGTCACTAATCATTCAGATCTTGCCACATGTCAAATTAATA14.545454545454546No Hit
AGAATGTCTAAACAAGTTTTCTAATCTTAATATTTATATCCAAACAAGTC14.545454545454546No Hit
ATTTTAAATTAAGTTGGAAAAGAAAGGTGATGCATCTTAACTTTCAAGCT14.545454545454546No Hit
CATTAATATCAAAATAAAACAAAAAGTTAATAAACAAAAAACAAATCAAT14.545454545454546No Hit
CATGTTGAGTCTTCAAGTCCTGATGATTCTCTTGCTCTTCTATATGTACC14.545454545454546No Hit
CTTTGGGACTAGTCTCCCAGGAATCACAAAGGATACACGGGTCTACGCAT14.545454545454546No Hit
CATATATTAGTGTTTGATTGTGTTCAATGTTGAAAAACAGTTTCCTAGCT14.545454545454546No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)