FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_011.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_011.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTCGCTTCGTCTCACTCAGCAGCTCTCTCCTCTTCCGATGTCAAGCTT27.4074074074074066No Hit
AAATTCGAGGGTCCAAGAGTTTTCTAAAACGTTCTTGGTGGAAAAAAATA27.4074074074074066No Hit
TATTGGTGCCTTCGGTGTCTGGCTCAGGGAACATAACGTGGACCGAACCA27.4074074074074066No Hit
TTATTAATTTCGCCAAAAATCGGCCACTCTATGCCAATTGTTTTCCCTTC13.7037037037037033No Hit
GAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGA13.7037037037037033No Hit
TTCTTCCTCTGATCCGTGCCACCTTATAGATTCGTTTGACTGACTGATCT13.7037037037037033No Hit
TGGTGGTATGATCCGATTGGCGTGTGGCATTGGACAAGACTATACCGAAG13.7037037037037033No Hit
GGTCCGGTACTGGATGTAGCCTTTCCCCCGGGTAAGATGCCTAATATTTA13.7037037037037033No Hit
GGTGGAGCTTCGAGTTCTTGTATATGTAGATGACTTGTTGATTTGTGGGA13.7037037037037033No Hit
CTTCTCTGTTTCCAACTTTGATTGGTATGTTGATACTTCTATCTAATTTT13.7037037037037033No Hit
CCAACCGGGATCGATCTATCTGTGCCGATTGATCGATCCCTGCAGAACCT13.7037037037037033No Hit
GTCTAAATAGGCTATTCTATTTGTACAGATATGGAATAGGGGGCACATTA13.7037037037037033No Hit
AAAGAAAATGCTACATTATGTATGCAAGTCCAATACAAAATCAGGATCTG13.7037037037037033No Hit
GTTTTGTAACCGTCGAAAGCAAGATTCATGATCGGAGTTCTAAACGGAAA13.7037037037037033No Hit
CGTCTAGAGGGATGTAATACTATTAGCTGCGAAAGCGATCAAGAATGGAA13.7037037037037033No Hit
GAATATATGTTTATCATCGCAATCTTGATTATATCAGCAGCAGATCCCTG13.7037037037037033No Hit
GTCTGAATAATACTCATAAAAATCAGAAATAAGAAACAAAAAGAGTTCAA13.7037037037037033No Hit
GTATATGGATCCTATGCGGATTGCTTCGACGAGTCTTGGTGTAAGAAAAA13.7037037037037033No Hit
ATCTCACACCGGGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACA13.7037037037037033No Hit
GTGTATAATTTGAGACTAGATAAAGGGAACATATCTGATTGTCTCAATCT13.7037037037037033No Hit
GAATTGGTTTTTCTATCACAGTTAATAGAATTACTCCATGTTTTGTCGTT13.7037037037037033No Hit
GTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATTCAG13.7037037037037033No Hit
TTGCTACTGCGGGCTTTACGCAATCGATCGGATCATCTAGATATCCCTTC13.7037037037037033No Hit
AAGACACAGGGAACGGGTTACCTACTCTTAACGGTCAAAGCGAACCCGTT13.7037037037037033No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)