FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_008.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_008.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATTTGCATAAAACGATTTTGCAGCGGAATAAGTTTCACACCGCCTT11.2048192771084338No Hit
GAAGACGGGTGAACTCTCGATTATATGTAGAAACTTTTTCAGCTTCAAAT11.2048192771084338No Hit
AACTATGACTCAACAGAGAATAAGAGCTTTAGTTTCGGCTCATCGGGATA11.2048192771084338No Hit
ATGCTGATGAGAGTGCCAAGGTGGCACAGCAGGGAGTTCTTACCTTCATG11.2048192771084338No Hit
CATTAAATTCTTCTTTGTTTATTAGAGTTTAGTCCAAATTTTTTTGTTTC11.2048192771084338No Hit
GTGTTTGGATTCAATGAATGTATAAAAAATTTCCTCATTCAATGAATCTT11.2048192771084338No Hit
GCACAAATTCTTATTTTGATGCTATTTTAGAGAATTTTTCTATAATGACA11.2048192771084338No Hit
GTTGGCATGTATACCTCGAAAAATTAAAGCATGCTAAAAATATCGAACAA11.2048192771084338No Hit
GTTTGTGTGGAGAGAAGATTCAGAGCTCAACCTTTGTAGAGAGAAGAATT11.2048192771084338No Hit
CTCTTGTACTACTTCCAAAGTTTATTGTATTTATTTCCCAAGGTTGAATG11.2048192771084338No Hit
AACACCTTACAATCTTGGAGTGAATCATGAGCCGATGACGAATAAGAGAA11.2048192771084338No Hit
CTCCTAGCCTTTTTCCACCAAACTAGAGCTTTTATCTATTTTATGTTATA11.2048192771084338No Hit
CCTTTAATGTATGTAAGGAGTTGACTGAAGTGAATTCAAAAGTCTCTTGA11.2048192771084338No Hit
GGATAATCCAATAGTGAACTGCGAATTTAACAGACTTTGTCTGTGAACTG11.2048192771084338No Hit
GTTCTTGATCAGCTGTTTCTTGTGGTCCATCGTGTTTAGGATCATGTTTA11.2048192771084338No Hit
AATTAAAGCAATATATTAACCTCATCTGATATATATCATCATCTACTAGT11.2048192771084338No Hit
GCTGTATTCANGCGTGTTCAAAACGCGAATCAGAGTATTCATTCTTATGG11.2048192771084338No Hit
TATATATACATAACCTGAATATAATGAAATTAAATATTACAATAATAAAG11.2048192771084338No Hit
ATAATATGTACTGCTACTCCGTTGCACTACATGGAACCCTCAGAACAGCT11.2048192771084338No Hit
CATAAAGTAACAAGAAAACAGAAAACAAAAAAATTAATCCAAGTCTCCCG11.2048192771084338No Hit
GAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTAC11.2048192771084338No Hit
CATCTGCTTCTTCCCTGAAACACAAACCCCAATAAGCTTCATAACAATCT11.2048192771084338No Hit
ATCCATTACATATGAGATGTAACAATGGAGATTGAAATAGACAAGTAAGT11.2048192771084338No Hit
CTTTAGTAGCAACTAGTTGTTTATTCTTGCTGCTCCTAAGATTCATACAC11.2048192771084338No Hit
GCTTTCTCCTGTTACATTACATGAATCATATTTTCATTTCATCCGGGAAT11.2048192771084338No Hit
CTCTTATGTCAATGACACCAAAGGGATATTAAATGAATGGAATTGGGATA11.2048192771084338No Hit
GATGAAACAACTGATAAAGTACCTTTTGTCTTGATAAATCTCACTTTTTT11.2048192771084338No Hit
CACATATATAGTTATATATATATATACGCATATGGTTTATATATATGAAG11.2048192771084338No Hit
GGATATTTCTTCCTCGTTACGCTTTACGCTTCTTTAGGGAATAAGGAAGG11.2048192771084338No Hit
CATTATTCTGTAATACATAGCCAACTGATAGTAAAAGAAATGTTTATTTA11.2048192771084338No Hit
ATATAAACAGTATGCTATAAATATTCCAAACAAAGCTATACTGACGGAAA11.2048192771084338No Hit
GCAGTACACTACTCAATGTCCTCATCATGGCTTCACCAAAGAATCTCTAC11.2048192771084338No Hit
TATTTGCTTATTGTTGACAAAAACATTATTAATTAAGTTGTGTTTCTTAA11.2048192771084338No Hit
GTTATTAAGGATACAATACTAACCACACAATTTATATAATTAAAAAATGT11.2048192771084338No Hit
ACATAACATGTAGTGATGCTACCATACCTTTGGAAACGGAACAAGTTCAC11.2048192771084338No Hit
TAATAAAACAAAATCGATGAAAACTAATTACAGTATTAAAAAAATCAAAC11.2048192771084338No Hit
GCGCGGCGGCGCGCAGCTCTTCGGCAGTCGGCGTCACATTGACCGGGGCC11.2048192771084338No Hit
GTTTTGTTCCGAAGTAAAGATATCCACGGAGTGGTTCGCCCTATTCAGAT11.2048192771084338No Hit
ATACTATACCTTCTTGGAGCGGACGCGACTGATTCCTTTCTCAAGCNTAC11.2048192771084338No Hit
GTTCAAGGGACAGTCTAAGGCGGAGCGGATCGAGGAGGAGATTAGGCGAG11.2048192771084338No Hit
AACCTGCTATTATCTAAAATTAGAAAGTATAGGAGAGGAATTGGTTATTA11.2048192771084338No Hit
AAGTTGTTCCAACTTATTGATTCGCACTAACCCTAGATCCTTACTCCTGC11.2048192771084338No Hit
GATATATCTAATCCATTCATAATATCAAGAAAAATGGAAACAAATTTTTG11.2048192771084338No Hit
ACATATCTCTCGTTATTTGGGACCCTATTCACCTCTTTGGTTGGACTTCT11.2048192771084338No Hit
TTTTTAGACTAAATTCAACCATAAACCTAATGGTGAATACAAATAAAAGA11.2048192771084338No Hit
CTTCTGGTGACCATTGTTGCAGAGCTTATTCAGATTCAACGAATGGAAAA11.2048192771084338No Hit
TAAAATAATACAAATTAGACAAATTCACCAATTTTCAAAGTACAATAATA11.2048192771084338No Hit
GAACCAAAGGTTTCATGTTCTTTTCGCTTCCTCAGCTCACCTGAGCACGT11.2048192771084338No Hit
ATAAATGATAATTATTTACACAAAAAATAGTAAAAAAAATATGAAAATTT11.2048192771084338No Hit
CACTAAAAACACAAATATAAATTCCCCAAAAAAAATAAAAATAAACACAA11.2048192771084338No Hit
CCTCATATGTACTAAACACATCGCTAAAAGCTTTCTCTTTAGCCCTCCAA11.2048192771084338No Hit
GTATGTAATGTGTCTGCTTACGCCTTACGGTTATAAATCATCCTCCAGGG11.2048192771084338No Hit
TCTCAGATGGAAATGTTTTTTTTTAGCTACTTAAAAGAAACAAAGATCAT11.2048192771084338No Hit
GTCCTCAATTAAGTTTACGTCATGACCGATTAATCTCCTCTGAAGAGGAT11.2048192771084338No Hit
ATGTATGTTCTATCTTTAGTGACTAGAAGAACCACGGCTGTGTTTGATTC11.2048192771084338No Hit
ATATATTGGTGATCANTTTTTAAATTACTGTCTAGTTTATTTTGTCAAAA11.2048192771084338No Hit
ATTGACAACAACGGCTATTCCAAACAAAAAAAATCATATATACGTTATAG11.2048192771084338No Hit
GCTCTCGGGGGTCATGGATGATAGAGGAAAATACATTTATATATCAATGG11.2048192771084338No Hit
GCCCGCTATAGCCTTAGCTAATTTCTGTCAGTTCCTTTTACCTCATGGAC11.2048192771084338No Hit
GCATTGACCTTGTTTCTCGTGTGAAAAGAAGGATTTATTTGGTTTCAATT11.2048192771084338No Hit
GAGATAGTTCATAGTTTCTAACTAGGTTTGACTCAATAAAACAAAAATTT11.2048192771084338No Hit
AGCAATGGAGGCTGAAACAAGAGTGGGTTCTATTGATATATGCAAGGAGA11.2048192771084338No Hit
CATCTTAAAACAATATATATCAGAAGATCTAAAAAAAAAAGCCCAAAAAG11.2048192771084338No Hit
GATAGACTTATTGTTGAGTGTGATAGGAAGATTAGTAGGGCTCTTAAGCG11.2048192771084338No Hit
AAACAAAACTTCTCCAATTTACCAATTTTTTTCAAAATCATCTAAAATCT11.2048192771084338No Hit
AAGTAAATCAGATGCCATGGTAGCCCATTCACCATATCGCTGATGGTTCT11.2048192771084338No Hit
GCTTTGATCTTTGCCAACTCGTCTCAAAGCCCTAGATGGTCAAAGTACTC11.2048192771084338No Hit
GTTTTCTTTTACTTAAAATATCCACATTCACACATGTACATAAATTCACT11.2048192771084338No Hit
GTCCCTACGGAGAGCGACGTATCTCTATTCCNAGGACATACTTTAGTATC11.2048192771084338No Hit
ATTATCAGCTGATGCTTCGTACCATCGATTCTCTCATAAGCTTCACCTAA11.2048192771084338No Hit
TCACGAGTCCGTTCGCCTACTCCACCATATACGGAGACACCACCATGAGC11.2048192771084338No Hit
AATATAAGGGTAGGGCAGAACCCGAACAAAACCGGGTGAAACATTGACCT11.2048192771084338No Hit
CTTAAAGCAATTATCTATAATTCAGCCGAAACAACTTAGATTGTAACATT11.2048192771084338No Hit
GAATAGTAATGTAAACCTTAGAATGGAACAAAAATATAAAAAAACGGATC11.2048192771084338No Hit
TACCACATCAGAAAGAGACTGTCCTGTGCGTACGGCAGGCTCAGATCCTG11.2048192771084338No Hit
AATTTGTAGCAAAGAGAAGATCACAAATTTTGTCTTCAACATGAACATTT11.2048192771084338No Hit
TAATTCTTTATCAAAATTAACAAGCAAAATAAAAAAGACAAACTATCAAT11.2048192771084338No Hit
GAATAAGAGGAATAAGGCATCGATAGTTCCAATTTATGGCGGCAAGGTGC11.2048192771084338No Hit
CATTTATGTTTAGATTATGAATTTTAATTCTCCAATTTCACTCGTTTTAT11.2048192771084338No Hit
ACACAAATGTTAGATAACAGTTCCATACATTCAACCCTTAAGGTTGCTGA11.2048192771084338No Hit
GCTATTGCTGCTGCTATTTCTTAGTATACCGGTAATTTCCGCTCATGTTT11.2048192771084338No Hit
CTACAAATATCTTTTAAAAAGAATTTGATTTAAAACGTATAGTCCAATAT11.2048192771084338No Hit
ATAATATACTATGTGTATGCTACGTTTTTTGTCACTTGTAGTTGGAATTA11.2048192771084338No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)