FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_ath_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_ath_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTCCTATGGACTTTGGCTACACCATTAAAGATTTGAGAAGCAAGAAGA11.2658227848101267No Hit
CTGTTGGAAAATTGAAACCATAACTCTTCTAGGATATCTGTGTAAAAATA11.2658227848101267No Hit
GGGGTTAAAGCTACGGTTAGGGCTAGGATTAGGATAATCTTGTAACCCAA11.2658227848101267No Hit
GACTAGTATAATAATTAAATCTAGATGAAGAACATTATAGATAACCTAAC11.2658227848101267No Hit
ACAACCAAATTAACAAAAATTCCATCTCACAAAACAAAAGACACAAAACA11.2658227848101267No Hit
GTACTCCTCCCCATTGTCCCTAATTCTGAATTTATAATGGTGAGATGATT11.2658227848101267No Hit
GTTTAACAATGTCTTGTGAGTGAATCCAAGATTATGATGATGAGATGATT11.2658227848101267No Hit
TAGTATAGCATAGATTGCATTTGCATATCTCTTTTGTAGGTTTTAGCAAA11.2658227848101267No Hit
GTATTATCGGATAGAGATTCTCCAGTCTTCAGGTATTCCAACTTCTGGTA11.2658227848101267No Hit
GTTGATTGATCCGTTCTGCCATTGATGCGATGAGTGATTGATCTTGCTGT11.2658227848101267No Hit
GTATTGTTTTTATAAAAAAAAAATCAAGAGAAGTGATTTTTTCGTGTATA11.2658227848101267No Hit
TCCTCAAGAAGTTTATGCCTACTCTCTCTGTTTCAGGCCCACCAATAGTA11.2658227848101267No Hit
CGTTCCATAAGGTGGAATGTTTCAGCTGGAGCTGCGCGGCCAATCCGTCT11.2658227848101267No Hit
AGTCTTAACAAATTAGTATTCGCAATTTGTGAGGGTCGTTCTAGCTATAT11.2658227848101267No Hit
ATTTTATATATTACAGGAGGTAGCAATGATTTGTAATCAAAATATGGTTG11.2658227848101267No Hit
GTTCCGCAGAATATATGACTCATGCTCCCGTAGGTTCCTTAAATTGTGTC11.2658227848101267No Hit
CAAATACAATTACTCTTAAACATATAACTAATCGCTAATACAACATACGA11.2658227848101267No Hit
TTGCTGAATAGAGCCCCTACTCTACATAGATTAGGCATACAGTCATTCCA11.2658227848101267No Hit
ATATAGAATAACTATTCTTATTACTATCCCTAATAAAAAAGGTGTCATCT11.2658227848101267No Hit
GTATATGGACTCATCTTGTACACTAATTTGTATTGTACACCAACTTGTTT11.2658227848101267No Hit
ATGTCGGAGACCGTCTCCAGGGTATCGCGGACAAATATTTCGCCCGGTCG11.2658227848101267No Hit
TCATAAGTAAACTATCAGGCCCGGCTCATAGCCCAAACAAATGAAACAAT11.2658227848101267No Hit
ACATAAAATGGATGAAAAATTATTTACATGTTTAAGACTATAATTACTTA11.2658227848101267No Hit
ATTGTTATGGTATGTTCTTTGTTTGGGGGGGGGGGGGGGGGGGGGGGGGT11.2658227848101267No Hit
AAGCTATGCATATAATGTATATGAGAATTTGACTATATGCCCCTTCTTAA11.2658227848101267No Hit
ATATTATACATTGGTTCCCTGAGTGCAATTGATGCTATATGATTTCCTTC11.2658227848101267No Hit
GTATTGCTTGATAAAGGATTCATTATTCCAGCGAGGTGCTAGCGATCCAT11.2658227848101267No Hit
CCTCCACCACAAGGACTAGCCGAAGAGAAAACGTATCGTGTTCCTTACTT11.2658227848101267No Hit
CACATTATGTTTTTCCAAAGCTAATCTTTAATTTACAAAAGTTATAATTA11.2658227848101267No Hit
ATACCAAGTAGCTTTTGGTTCCATCTTATTGTTTGTCTTTTCCATCACCG11.2658227848101267No Hit
GCATAGGAGTGTCTCGTGTCGCTGAAAGAAGAGATGTGCTACCTTAATCA11.2658227848101267No Hit
TCTTCAAACTCCGATTCGTATTTTTCATAGAGAAATCTCTGGTCAACGAT11.2658227848101267No Hit
AGGTTAGTATTAACGGTCATCTACGTAGTAGCAAATAAAGAATACGTTCA11.2658227848101267No Hit
GAATCACTCAGAGACTAAAAAAATGAAAACGATTCTATCATCTGAGACGA11.2658227848101267No Hit
TTGTCACCCATATTATTACAGTATGTATTTGGTTAACGCATATGCTGGTT11.2658227848101267No Hit
CCCTATTAGGATGTACTATTAAACCAAAATTGGGGTTATCCGCGAAGAAC11.2658227848101267No Hit
TGACATGAAGTCATATTCGACTCCAAAACACTAACCAACCTTCTTCTAGC11.2658227848101267No Hit
GCGTAAAGGTATTCATATTAGAAATCTGACTCGAGCTGATCGTTTGTTAT11.2658227848101267No Hit
ATACTTAGCTTTTGAAAACAGTATAAGAAAACTAAAGCTTATACCTTTGT11.2658227848101267No Hit
ACATTGTAGAATCTATGCATAGCTGCTGCATACAGACCTGTTCAAGAGTT11.2658227848101267No Hit
CATACTGGCAATGAGTTGGGCATTGATCGGAGACAGGGATCGATTGAATT11.2658227848101267No Hit
GTCAAGATCTGGACAATCAAATATGTTCCCTTTTTCTAGTCCCAGATTAG11.2658227848101267No Hit
CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG11.2658227848101267No Hit
CCTTTTTGATCGAGTTGAATTTCCCTGTGGTTCAAACTAGTGATATCAAT11.2658227848101267No Hit
GAACAAATGATCCTGCAATTCCATCTCAAGCTTTTATCGACCAAACACAA11.2658227848101267No Hit
AGAGAAAGCTGTGTACCAAAAGCAGAAAGAAATGTACAAAGGAATATTTG11.2658227848101267No Hit
CACTCGAAACCAACCCTAGTTCCTGCATCTTCTCCAAAAACACCCCATTG11.2658227848101267No Hit
CATTCCAATATGAAGGGTTAGTCAATCAAATAATAGATAGGAAATGCGTC11.2658227848101267No Hit
TCCCGGAGCTACGGTCTATCCGCAGCCTGTTGGGGCGGTTCCTGCCGTCT11.2658227848101267No Hit
TTGAATTTCTCATTGTGGTTTAAACAAAATTTGCCAATGATCGTGAACCA11.2658227848101267No Hit
TCAATATATTGTTCTCTGTTTTTTTTTTCTTCTTCTTTCAACACTTGTTT11.2658227848101267No Hit
AAATCTTTGTGAATCATGCTCGTCACACAAGCCAGGTACTTGGCTCCATC11.2658227848101267No Hit
CCTGGGGGCTGCTCTAAATTTGGCGGAGCCAAATTTAAAGGAGCTGCTAT11.2658227848101267No Hit
ATATTTTAAATNTTCATAAGATTTATTTTTATTTTAGTCGATTGATTAAG11.2658227848101267No Hit
ATATAGATGTAGTTAATGATTAATTCTATTAATCATGGTATTTTTTGAAA11.2658227848101267No Hit
CGACCGACATGGCCAGCTGCATGTCGATCGATATGAGCAGAATCAGAACC11.2658227848101267No Hit
GATATATAATGATCCCATCTTTGTATGTGTTGCAGACCATTCCAGTAAAC11.2658227848101267No Hit
GGGTTACGTATAAAACACGGTACCTGTATGTCTTTACAAACTTTTTCATC11.2658227848101267No Hit
GGAGGATCGGCTTGAAAATCAAGCGGAGGAAACAGTGAATCGGCGCAATA11.2658227848101267No Hit
CCTTCTCTGTTGCAATTTATGATTGAAAGAGAATACAAAATTAAATAATT11.2658227848101267No Hit
GAATTATTAGNAAGCTATGCGACTAGAAATTGACCCCTATGATCGAAGTT11.2658227848101267No Hit
ACTAAAAACACCCAAATGGAAAGACGCCAAATGGAAACAAGTATTTTTTC11.2658227848101267No Hit
ACTTTGTGGTACACTTAGCAGAAATTGATATGTAAAAATTATAATTCACT11.2658227848101267No Hit
CCCCTGTGTTGCGCTGTGCCCTCCATGCCGTTTTCTGCAGCTGTTGTTAC11.2658227848101267No Hit
CAGAATTCCCTCTACGAGAAGCTCCAGGCCAACGTTGCTGGTCCAATGGC11.2658227848101267No Hit
TATCTGTTGTTGGTTCATGTTGTATGCACATTGTTGTCCATAAGTACATG11.2658227848101267No Hit
GAGGATGAATAGATTGCTAGAGCCAATTTGTGTCACAAAACTTACTTGAT11.2658227848101267No Hit
GCCACCGTCAATTTTGGTGCTGTCATCATCATAGTCACAAAGTTGTTAAG11.2658227848101267No Hit
ATACACACCAAATGAAACCATTAACAATTTCACAACATACTCAATATGTG11.2658227848101267No Hit
CTCTACACCCTCTTCCTCAATGGAACAGAGCATACTCTGTTTTCAATGAT11.2658227848101267No Hit
ACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGT11.2658227848101267No Hit
CTGTTAATTCTTGTCGGGGGATATGCCACATGCATAGAATCTTTGTATGA11.2658227848101267No Hit
TTTTACCACCTTTTTATCATGCTTTAGAGTAGATTTCATCCATTGTTTAT11.2658227848101267No Hit
AGACATAAGAGAAGCACTGAGAGGGTTCAACAAATGTAAAGCACAAAACT11.2658227848101267No Hit
ATCCTGAAGAGATGAGTCCAGGTAATATCGGCTTTTGAGTATTCTTGCTA11.2658227848101267No Hit
CTGGTGTTCCTCCCTGTCACAGCGTGACTTGGTTTCCTCGCATTTTGATA11.2658227848101267No Hit
CTGTTGGGGATGATGGAATTACAGCGGGCGGCGAAGGCACTGGAACAGGG11.2658227848101267No Hit
CGGTATACTATCCCCCTTACATCCTAGCATCATCTGGTTTAGTCTCTGGA11.2658227848101267No Hit
GCAACCAGAAGAGGTGCTGTTCAAGTAACCTTTTTTCCGCAAAGCGGCAT11.2658227848101267No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)