FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Nov_G3_DIP_PC_1wkTYM1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Nov_G3_DIP_PC_1wkTYM1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10190191
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4078234.002113404940104No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC674810.6622152617158992No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT640560.6286045080018619No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT472100.46328866652254114No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG451120.4427002398679279No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA444180.4358897688963828No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA362460.3556950012026271No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG333670.3274423413653385No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTG296220.29069131285174143No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG270140.2650980732353299No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG218450.21437282186369225No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTG215860.2118311619477986No Hit
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCA210560.20663008181102788No Hit
CTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAAT203440.19964297038200757No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATA201650.19788637916600388No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT180010.1766502708339814No Hit
GCCACACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACA173340.1701047605486492No Hit
CTAACATTAAGTTGAGGACTCTAGAGATACTGCCTGGGTAACTGGGAGGA164360.16129236439238478No Hit
CTGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCTCTTACGAGTGG160950.157946009059104No Hit
AGCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGA155290.15239164800738278No Hit
CCTATCTTTAGTTACTAACATTAAGTTGAGGACTCTAGAGATACTGCCTG153650.15078225717260846No Hit
CACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACATGGA149740.14694523390189643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAA148170.14540453657836247No Hit
CTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGGT147850.1450905090984065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA145350.1426371694112505No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG143310.14063524422653118No Hit
GTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACATTAAG142550.13988942896163575No Hit
GTGGGGATGACGTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACG142030.1393791343067073No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT138110.13553229767724667No Hit
GGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCAAGGGTTCTGC138060.13548323088350356No Hit
GGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT136780.13422712096367967No Hit
GGACTCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGT136400.13385421333123196No Hit
CTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGAT130420.1279858247995548No Hit
AGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAATCA124600.1222744500078556No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT122750.12045897863936016No Hit
CTCAGTTCGGATTGGAGTCTGCAATTCGACTCCATGAAGTCGGAATCGCT121480.11921268207828489No Hit
TCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAA120670.11841780001964634No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGC120420.11817246605093075No Hit
CTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGACTCCATG119530.11729907712230321No Hit
GGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGC117920.11571912636377474No Hit
GAATCACTGACGCAGCTAACGCATTAAATGATCCGCCTGAGTAGTATGCT117520.11532659201382978No Hit
CTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGGGTTATAAGCT116610.11443357636770497No Hit
CAAAGAGAAGCAATATGGCGACATGGAGCAAATCTCAAAAAGCCGATCTC115270.11311858629538935No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAA115080.11293213247916552No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA113570.11145031530812327No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTG112360.11026289889953976No Hit
GCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGAC107280.10527771265523875No Hit
CCTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGG106840.1048459248702993No Hit
ATTAAGTTGAGGACTCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTG106620.10463003097782957No Hit
GGCGACATGGAGCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTC105590.10361925502672129No Hit
AAGCAATATGGCGACATGGAGCAAATCTCAAAAAGCCGATCTCAGTTCGG104570.10261829243436163No Hit
ACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCT102740.10082244778336343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)