FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Nov_G3_DIP_PC_1wkDIP1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Nov_G3_DIP_PC_1wkDIP1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24657227
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6525452.646465476430095No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA923940.37471366914049176No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG799290.3241605392204079No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC741570.3007515808651151No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT661820.26840812229209715No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT647930.26277488543216965No Hit
AGCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGA529000.2145415621959436No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG502200.2036725378729733No Hit
CTAACATTAAGTTGAGGACTCTAGAGATACTGCCTGGGTAACTGGGAGGA499450.20255724619804163No Hit
GCCACACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACA497400.20172584694945622No Hit
GAATCACTGACGCAGCTAACGCATTAAATGATCCGCCTGAGTAGTATGCT482000.195480213569839No Hit
CCTATCTTTAGTTACTAACATTAAGTTGAGGACTCTAGAGATACTGCCTG457690.18562103516344314No Hit
CTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAAT457610.18558859031471786No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT455130.18458280000423405No Hit
CTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGGT444410.18023519027504592No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG428390.1737381093178077No Hit
GCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGAC420400.17049768005136995No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA418640.1697838933794137No Hit
CACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACATGGA413820.16782909124371528No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT407970.16545656168067885No Hit
GGACTCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGT369980.1500493141422594No Hit
CTGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCTCTTACGAGTGG357500.144987917741115No Hit
GGCGACATGGAGCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTC356740.1446796916782248No Hit
TCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAA354990.1439699606123592No Hit
AAGCAATATGGCGACATGGAGCAAATCTCAAAAAGCCGATCTCAGTTCGG349880.14189754590003165No Hit
CTCAGTTCGGATTGGAGTCTGCAATTCGACTCCATGAAGTCGGAATCGCT344700.1397967419450695No Hit
CTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGACTCCATG342630.13895723148430275No Hit
CAAAGAGAAGCAATATGGCGACATGGAGCAAATCTCAAAAAGCCGATCTC327310.13274404295341077No Hit
GTGGGGATGACGTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACG311360.12627535123880718No Hit
GTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACATTAAG311190.12620640593526594No Hit
ATTAAGTTGAGGACTCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTG309710.1256061762338482No Hit
GTCTGGAGTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGC304510.12349726106670471No Hit
GTCGGTACAAAGAGAAGCAATATGGCGACATGGAGCAAATCTCAAAAAGC304000.123290425156081No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT302470.12266991742420993No Hit
CCTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGG302460.1226658618181193No Hit
CTGGAGTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAA302130.12253202681712749No Hit
GCGACATGGAGCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCT283670.1150453779737681No Hit
GTTTAAAGAGTGCGTAATAGCTCACTAGTCGAGAGACTTTGTGCCGATAA273990.11111955127800868No Hit
AGCAAACTAGAGTTAGATAGAGGTAAGCGGAATTCCATGTGAAGCGGTGA270850.10984609096554125No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG269950.10948108641738181No Hit
GCTGTTTGTTAAGTCTGGAGTTAAATCCCGGGGCTCAACCCCGGCTCGCT266940.108260348984093No Hit
AGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAATCA264930.10744517215987022No Hit
CACACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACATG262210.10634204730321052No Hit
GTTGAGGACTCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGAT262190.1063339360910292No Hit
CTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGAT257910.1045981366842265No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA257160.10429396622742695No Hit
GTTCGGATTGGAGTCTGCAATTCGACTCCATGAAGTCGGAATCGCTAGTA255980.10381540470872902No Hit
GTTAGATAGAGGTAAGCGGAATTCCATGTGAAGCGGTGAAATGCGTAGAT252020.10220938469682743No Hit
GTTTGTTAAGTCTGGAGTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTG249620.1012360392350689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)