FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Nov_G3_DIP_PC1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Nov_G3_DIP_PC1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7603203
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3371594.43443375114409No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT656100.8629257958783949No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC655130.8616500177622509No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT543400.7146987920748663No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG435880.5732847064585807No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG204750.2692944013200752No Hit
CTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGAT203850.26811068966592105No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG203080.26709795858403357No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA190220.25018403428134167No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG188570.24801389624872572No Hit
ACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCT174480.22948223268535645No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA168200.22122255580970282No Hit
GGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT145080.19081431864965331No Hit
GTTTAGCCGGGTCGAGAGACTGAACGGCCACATTGGGACTGAGATACGGC135770.17856947920501398No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTG131320.17271668269280724No Hit
CTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGG128010.16836325427586243No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAA125210.16468059579627164No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT123350.16223425837768635No Hit
CCTGGCTCAGGATGAACGCTGGCTGTGTGCCTAATACATGCATGTCGAGC123280.1621421919156966No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA123270.16212903956398375No Hit
GTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGTGATTACC121270.15949856922141892No Hit
GATGAACGCTGGCTGTGTGCCTAATACATGCATGTCGAGCGAGGTTAGCA120720.1587751898772136No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT120570.15857790460152124No Hit
CTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGGGTTATAAGCT118620.1560131960175205No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT115920.152462061055058No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTG109950.14461010708250194No Hit
GAACGCTGGCTGTGTGCCTAATACATGCATGTCGAGCGAGGTTAGCAATA109490.14400509890371202No Hit
GGAACATTAGTTAGTTGGTGAGGTAATGGCCCACCAAGACTATGATGTTT108120.1422032267190551No Hit
GAATCACTGACGCAGCTAACGCATTAAATGATCCGCCTGAGTAGTATGCT101890.13400931160196564No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT95900.12613105292598395No Hit
GGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTT92450.12159349158505962No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA91900.12087011224085428No Hit
GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGATCATTAGTCGGT91450.1202782564137772No Hit
AGGTGATCTACCCATGAGCAGGTTGAAACTTAGGTAACACTAAGTGGAGG89370.11754256725750975No Hit
TGAACGGCCACATTGGGACTGAGATACGGCCCAAACTCCTACGGGAGGCA88870.11688494967186855No Hit
GTGAAATTCCCGTAAGCGAAATGTATAAATCTCCTAGCAGTATCCTGAGT88580.11650353147219666No Hit
GGATGAACGCTGGCTGTGTGCCTAATACATGCATGTCGAGCGAGGTTAGC87760.11542503863174505No Hit
GTAATGGCCCACCAAGACTATGATGTTTAGCCGGGTCGAGAGACTGAACG87390.11493840161837057No Hit
GCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGATTT87310.11483318280466799No Hit
GTGAAAAGAACCCCGGGAGGGGAGTGAAATAGATTCTGAAACCAATTACT85530.11249206419978529No Hit
GCCTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTC84870.11162400898673888No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA84390.11099269610452332No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG81610.10733634232835819No Hit
GTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATA79960.1051662042957422No Hit
CTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTTGCTCTTT79720.10485054785463442No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAA79620.10471902433750618No Hit
AGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAAT79490.10454804376523946No Hit
GATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTTGCT79170.10412716851042908No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA78780.10361422679362896No Hit
CTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAAT76520.1006417953065307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)