FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Dec_day9_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Dec_day9_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13721949
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3538022.5783655076986514No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT321650.23440547694791752No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA303520.221193068127567No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG267450.19490671478228058No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA227710.16594581425714378No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT210780.15360791677625388No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC205650.14986938080005982No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT202760.14776326599085887No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT202720.14773411561287686No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA194950.1420716546898695No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT190150.13857360933202711No Hit
CTAACATTAAGTTGAGGACTCTAGAGATACTGCCTGGGTAACTGGGAGGA176230.12842927779428417No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG172160.12546322683461367No Hit
CTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAAT169900.12381623047862952No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG165480.12059511371161633No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA164920.12018700841986804No Hit
GTTTAAAGAGTGCGTAATAGCTCACTAGTCGAGAGACTTTGTGCCGATAA161250.11751246124001773No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG160730.11713350632625147No Hit
CTGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCTCTTACGAGTGG158220.11530432010787972No Hit
CTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGGT156740.11422575612254499No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAA152190.1109099006270902No Hit
CCTATCTTTAGTTACTAACATTAAGTTGAGGACTCTAGAGATACTGCCTG148580.10827907901421292No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA147440.10744829324172535No Hit
GTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGGGAGTTAC141280.10295913503249429No Hit
AACGATTCAGAGTGAGAATCTCTGACGCCTATTGGGGAAGGTTTCCTGGG140500.10239070266184491No Hit
GTTTGATTTAACATGTGTAGGATAGGTGGGAGACGTTGATGCTTGAACGC139170.10142145259394275No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTG138160.10068540554989673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)