FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Dec_day8_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Dec_day8_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38330544
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16763034.373282570683056No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT909880.2373772728088597No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA833770.21752104535745698No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG749380.19550466072174713No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC691580.18042530259941No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT645810.16848443371949012No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAA616890.16093953688734497No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT607200.15841152684918847No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT604170.15762103454623552No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA594750.15516346441626291No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA556360.14514795302670372No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA544510.14205642372307578No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG537030.14010497737783215No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG528910.13798656236133774No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT483710.12619439995425058No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA475740.12411511822008056No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG455800.11891300055642309No Hit
GTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGGGAGTTAC448860.11710243402754733No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAA446050.11636933720533683No Hit
GTTTGATTTAACATGTGTAGGATAGGTGGGAGACGTTGATGCTTGAACGC445220.11615279970980845No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA435670.11366131406848805No Hit
CTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAAT419950.10956014608089049No Hit
AACGATTCAGAGTGAGAATCTCTGACGCCTATTGGGGAAGGTTTCCTGGG401320.10469979241619946No Hit
GAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAATAC394940.10303532347466814No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTG392030.10227613779757469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)