FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Dec_day8_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Dec_day8_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16384164
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3290202.008158609740479No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT429880.26237530337220744No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA417560.25485584739019945No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA343940.20992221513407702No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT340550.20785314404811864No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG340180.2076273162304772No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT311780.19029350536286135No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA260720.15912926652833798No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA252190.15392301981352235No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG243090.14836887619044828No Hit
GTTTAAAGAGTGCGTAATAGCTCACTAGTCGAGAGACTTTGTGCCGATAA224140.13680282985448633No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG216320.1320299284113611No Hit
GAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAATAC206580.12608516369831257No Hit
CGGGACTAAAACACAATACCGAAGCTACGGGCAGAAATGCGTTAGGAGAG204390.1247485071560563No Hit
CAAAATTGTGTTAAGTGAGAAAGGTTGTGAAGTTTCTTAAACAGCTAGGA195610.11938967407796944No Hit
GTTTGATTTAACATGTGTAGGATAGGTGGGAGACGTTGATGCTTGAACGC195240.11916384626032796No Hit
GGGGTAAGTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGG194200.1185290869891195No Hit
GTTGGCTTAGAAGCAGCCACCGTTTAAAGAGTGCGTAATAGCTCACTAGT188530.11506842827012718No Hit
GTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGGGAGTTAC187670.11454353118047403No Hit
GTGACGGGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAAC181910.11102794137070404No Hit
AACGATTCAGAGTGAGAATCTCTGACGCCTATTGGGGAAGGTTTCCTGGG180300.1100452851912371No Hit
CTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGGT173380.10582169465588845No Hit
GCCACACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACA173360.10580948774682676No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT173260.10574845320151824No Hit
AGCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGA172710.10541276320232146No Hit
CACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACATGGA172470.10526628029358105No Hit
GTGAAGTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTT168990.10314227811684502No Hit
CTGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCTCTTACGAGTGG168800.10302631248075886No Hit
GTCGGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGCGAGCTG168120.10261127757266102No Hit
GTTTCCTGGGCAAGGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGA167680.10234272557330358No Hit
GGCAGAAATGCGTTAGGAGAGCGTTGTAAGGGCTTAGAAGCCAGACCGTG167450.10220234611909403No Hit
GCGAAATTCCTTGTCGGCTAAATACTGACCTGCACGAAAGGAGTAATTAT166780.10179341466552702No Hit
CTCTGACGCCTATTGGGGAAGGTTTCCTGGGCAAGGTTCGTCCACCCAGG163990.1000905508514197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)