FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Dec_day7_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Dec_day7_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53614312
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13193302.4607795023090104No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT1628080.30366518551986643No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA1398760.2608930242357675No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG1354020.25254823749300376No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT1099480.2050721083579325No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC1075970.20068708519471443No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT1031810.19245047852148137No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA991240.18488346917517098No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT982440.1832421163960847No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG919850.17156799475483336No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA918160.1712527804143043No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA881040.16432925596434028No Hit
GTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGGGAGTTAC749510.13979662743783786No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG739650.13795756625581615No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT704930.13148168347287567No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA683610.1275051333308166No Hit
GTTTAAAGAGTGCGTAATAGCTCACTAGTCGAGAGACTTTGTGCCGATAA676550.12618832076032235No Hit
AACGATTCAGAGTGAGAATCTCTGACGCCTATTGGGGAAGGTTTCCTGGG676140.12611184864220584No Hit
CTAACATTAAGTTGAGGACTCTAGAGATACTGCCTGGGTAACTGGGAGGA645880.12046783329048409No Hit
GTTTCCTGGGCAAGGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGA638120.11902045856710798No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG636710.11875746908773166No Hit
GTTGGCTTAGAAGCAGCCACCGTTTAAAGAGTGCGTAATAGCTCACTAGT634550.11835459158741046No Hit
CGGGACTAAAACACAATACCGAAGCTACGGGCAGAAATGCGTTAGGAGAG629910.11748915103116497No Hit
GGAAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTTAGTCGGGTCCTAA627430.11702658797524063No Hit
CTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAAT624210.11642600207198406No Hit
GTTTGATTTAACATGTGTAGGATAGGTGGGAGACGTTGATGCTTGAACGC616210.1149338631819056No Hit
GGCAGAAATGCGTTAGGAGAGCGTTGTAAGGGCTTAGAAGCCAGACCGTG610730.11391174804220186No Hit
AGGTGATCTACCCATGAGCAGGTTGAAACTTAGGTAACACTAAGTGGAGG608170.11343426359737675No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG607860.11337644321538622No Hit
CTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGGT598950.11171457352656133No Hit
GAATCACTGACGCAGCTAACGCATTAAATGATCCGCCTGAGTAGTATGCT597280.11140308953325746No Hit
CTGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCTCTTACGAGTGG597280.11140308953325746No Hit
GGGGTAAGTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGG595220.11101886376906225No Hit
GAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAATAC591440.11031382814350019No Hit
CGATAATTCAACGGGACTAAAACACAATACCGAAGCTACGGGCAGAAATG588380.10974308501804518No Hit
GTGAAATTCCCGTAAGCGAAATGTATAAATCTCCTAGCAGTATCCTGAGT586040.10930663439269724No Hit
CTCTGACGCCTATTGGGGAAGGTTTCCTGGGCAAGGTTCGTCCACCCAGG585930.10928611748295865No Hit
GTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGTA585230.1091555553300768No Hit
GTGAAGTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTT573570.10698076289778745No Hit
GTGAAAAGAACCCCGGGAGGGGAGTGAAATAGATTCTGAAACCAATTACT572880.10685206591851817No Hit
GATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGGGTTATG571010.10650327845296234No Hit
CCTATCTTTAGTTACTAACATTAAGTTGAGGACTCTAGAGATACTGCCTG568400.10601646814007425No Hit
AGCAAATCTCAAAAAGCCGATCTCAGTTCGGATTGGAGTCTGCAATTCGA560970.10463064414591386No Hit
GTCGGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGCGAGCTG551060.10278225709582918No Hit
GAGCGTTGTAAGGGCTTAGAAGCCAGACCGTGAGGACTGGTGGAGCGCTT550270.10263490838043393No Hit
CTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGG549510.10249315518587648No Hit
AAAACACAATACCGAAGCTACGGGCAGAAATGCGTTAGGAGAGCGTTGTA546970.10201940108827658No Hit
AGAAGGGATGCCCACAATAAAATGTGGGCCGCAGTGAATAGTAAGGGGGA544980.10164823153936957No Hit
GTCTGGAGTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGC541200.10094319591380749No Hit
GTGACGGGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAAC537030.10016541851735411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)