FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Dec_day5_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Dec_day5_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35055693
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12399593.53711164688714No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT1014820.28948792996333006No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG914220.26079073661444946No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA824820.23528845942369475No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA809970.23105234291046534No Hit
CTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGG798280.22771764917042148No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC777700.2218469907298652No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT748710.21357729256700186No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT694390.1980819492000914No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG654060.18657739842712565No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT632210.1803444593150676No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAA582220.16608429335571828No Hit
GTTTAAAGAGTGCGTAATAGCTCACTAGTCGAGAGACTTTGTGCCGATAA577090.16462090765114812No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA573370.16355973907005633No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA571060.16290078761244287No Hit
GTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGGGAGTTAC569910.16257273818549245No Hit
AGGTGATCTACCCATGAGCAGGTTGAAACTTAGGTAACACTAAGTGGAGG568450.16215625804345105No Hit
GTGAAATTCCCGTAAGCGAAATGTATAAATCTCCTAGCAGTATCCTGAGT550490.15703298177559918No Hit
GTTGGCTTAGAAGCAGCCACCGTTTAAAGAGTGCGTAATAGCTCACTAGT518230.14783048219871164No Hit
GTGAAAAGAACCCCGGGAGGGGAGTGAAATAGATTCTGAAACCAATTACT506020.1443474530656119No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT499890.14259880698978053No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA497330.14186854043935174No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA495820.14143779727874728No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG494420.14103843275898156No Hit
AGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAAT490940.14004572666699244No Hit
GCCTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTC487980.13920135596805916No Hit
GTGAAGTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTT469700.13398679638140373No Hit
GTTTGATTTAACATGTGTAGGATAGGTGGGAGACGTTGATGCTTGAACGC467040.13322800379384883No Hit
GTGAAACCCTGTCTGAATTTGCCGGGACCACCCGGTAAGGCTAAATACTA465940.13291421738546147No Hit
GTAGAATAAAGCGAAGCCGTAGAGAAATCGAGTCTGAATAGGGCGATTTA456730.13028696936614545No Hit
GTTGAAACTTAGGTAACACTAAGTGGAGGACCGAACCGCAGTACGCTAAA446340.1273231141087412No Hit
AACGATTCAGAGTGAGAATCTCTGACGCCTATTGGGGAAGGTTTCCTGGG435570.12425085991025767No Hit
GTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATA434150.12384579018306668No Hit
GTTTCCTGGGCAAGGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGA433100.12354626679324239No Hit
CGGGACTAAAACACAATACCGAAGCTACGGGCAGAAATGCGTTAGGAGAG432910.12349206732270275No Hit
CGATAATTCAACGGGACTAAAACACAATACCGAAGCTACGGGCAGAAATG432070.12325244861084332No Hit
GGAAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTTAGTCGGGTCCTAA428770.12231108938568122No Hit
GGGGTAAGTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGG426760.12173771603944615No Hit
CCTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCG415800.11861126237042298No Hit
GAATCACTGACGCAGCTAACGCATTAAATGATCCGCCTGAGTAGTATGCT413210.11787243800885636No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG410090.1169824256505213No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAA407650.11628639034464389No Hit
CCCAGATCGTCAGCTAAGGTCCCAAAATTGTGTTAAGTGAGAAAGGTTGT404250.11531650508235568No Hit
GATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGGGTTATG393700.1123070081655496No Hit
CTCTGACGCCTATTGGGGAAGGTTTCCTGGGCAAGGTTCGTCCACCCAGG393250.11217864099848204No Hit
GGCAGAAATGCGTTAGGAGAGCGTTGTAAGGGCTTAGAAGCCAGACCGTG392380.11193046447548476No Hit
CTATAATCAAACTCCGAATACTATCATGTATTACTATGCAGTCGGTACAT389720.11117167188792988No Hit
CTTAAACATAGAGGGTGAAATTCCCGTAAGCGAAATGTATAAATCTCCTA387710.11059829854169478No Hit
GGAATGGCGGCGCCTAGCCGTACTGACTATAATCAAACTCCGAATACTAT383670.10944584664179938No Hit
AAAACACAATACCGAAGCTACGGGCAGAAATGCGTTAGGAGAGCGTTGTA379200.10817073278226164No Hit
AGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGAAGGGATGCCCACAA376670.10744902404297071No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG373040.10641352889529242No Hit
GTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGTA372720.10632224557648882No Hit
CGATAGTGAACTAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGGGAGGG369510.10540655978474026No Hit
GTGACGGGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAAC365490.10425981309227007No Hit
GTATTACTATGCAGTCGGTACATCGGTGATAACGTCGATGCACGCGAGGG364870.10408295166208809No Hit
AAACACAATACCGAAGCTACGGGCAGAAATGCGTTAGGAGAGCGTTGTAA362510.10340973718591157No Hit
CCTGAGTAGGGCGGGGCACGTGAAACCCTGTCTGAATTTGCCGGGACCAC361100.10300752006243323No Hit
GAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAATAC360520.1028420690471017No Hit
GAGCGTTGTAAGGGCTTAGAAGCCAGACCGTGAGGACTGGTGGAGCGCTT358700.10232289517140625No Hit
CACGTCCCCAAGATGAGTATTCTAAGGCGAGCGAGAAAACTATTGTCAAG352370.10051719702132261No Hit
GATGATTTCATGCCTCTTAAAAAAGCTTCTAACATTAAGTGTTAGGAAAC351800.10035459860970372No Hit
GACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTATC351660.10031466215772714No Hit
CTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGGT351660.10031466215772714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)