FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Dec_day5_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Dec_day5_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17478403
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6118473.5005886979491203No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC517810.296257043621205No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT501130.2867138376429471No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG418190.23926098969110624No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT412120.23578813235968984No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA408260.23357969260692754No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG341770.19553845966362027No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA329240.18836961248690742No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT314110.17971321521766032No Hit
CTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGG297400.17015284519987323No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA296690.1697466295976812No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT274310.1569422561088676No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG260740.14917838889514104No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT255990.14646074930301126No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA246000.14074512413977408No Hit
AGGTGATCTACCCATGAGCAGGTTGAAACTTAGGTAACACTAAGTGGAGG241070.13792450031046888No Hit
GTGAAATTCCCGTAAGCGAAATGTATAAATCTCCTAGCAGTATCCTGAGT230060.1316252978032375No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTG222580.1273457306139468No Hit
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCA220300.12604126360972454No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATA218060.12475968199154122No Hit
GTAACAACTGGGTTATGTAGGCAAATCCGCATAACTTAACTGGGAGTTAC213530.12216791202262586No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA212240.12142985832286851No Hit
AACGATTCAGAGTGAGAATCTCTGACGCCTATTGGGGAAGGTTTCCTGGG208700.1194045016584181No Hit
GTGAAACCCTGTCTGAATTTGCCGGGACCACCCGGTAAGGCTAAATACTA207950.1189754006701871No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG204190.11682417438252225No Hit
GTTTAAAGAGTGCGTAATAGCTCACTAGTCGAGAGACTTTGTGCCGATAA197830.1131853980023232No Hit
GTGAAAAGAACCCCGGGAGGGGAGTGAAATAGATTCTGAAACCAATTACT193240.11055929995434938No Hit
AGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAAT190260.1088543386944448No Hit
GTTGGCTTAGAAGCAGCCACCGTTTAAAGAGTGCGTAATAGCTCACTAGT189900.10864837022009392No Hit
GTTTGATTTAACATGTGTAGGATAGGTGGGAGACGTTGATGCTTGAACGC189170.10823071192488237No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA188810.10802474345053148No Hit
GGAAGGTTTCCTGGGCAAGGTTCGTCCACCCAGGGTTAGTCGGGTCCTAA186450.10667450567423123No Hit
GCCTTGGGTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTC183600.10504392191895336No Hit
GTTGAAACTTAGGTAACACTAAGTGGAGGACCGAACCGCAGTACGCTAAA178220.1019658374967095No Hit
GGCAGAAATGCGTTAGGAGAGCGTTGTAAGGGCTTAGAAGCCAGACCGTG175750.10055266490880202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)