FastQCFastQC Report
Mon 5 Feb 2024
HNCJWDRX3_n02_Dec_day2_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCJWDRX3_n02_Dec_day2_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30555109
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7067472.3130239856123573No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC2260000.7396471732435973No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAAT2184940.7150817233216219No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGT993430.3251272970422066No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG676290.22133450743049224No Hit
CTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGAT391200.128030962023405No Hit
GGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT340410.11140853727604114No Hit
GTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGTGATTACC330040.108014669494388No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG313930.10274222880370024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)