FastQCFastQC Report
Fri 17 Jun 2022
HN7V7AFX3_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHN7V7AFX3_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190931176
Sequences flagged as poor quality0
Sequence length10
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCTCTAC17901541393.75913182454812No Hit
GGGGGGGGGG72246433.7838990736641147No Hit
TCGCTCTACA5068580.26546633746182974No Hit
TGGCTCTACA2867240.15017138950634235No Hit
TCGGCTCACA2689850.14088060715658088No Hit
CGGCTCTACA2668620.13976868816855764No Hit
TCGGCTCTAA2278560.11933933722798629No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)