FastQCFastQC Report
Wed 9 Mar 2016
HN3L7BGXX_n01_lbd38-gr_08.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHN3L7BGXX_n01_lbd38-gr_08.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38643824
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGCCT113950.012.80600412
CCTGCGT116700.012.44719366
GCGTTAT124700.012.01311969
TGCGTTA128550.011.73510668
ACGCCAG128200.011.6608781
TCCTGGC128500.011.6567228
CGCGGCC131500.011.62910911
GCTGGCC129450.011.46519940
AACGCGG130800.011.3437099
CGGCCTT132800.011.30443513
GCAAGGG113750.011.1981958
CACGAGT259300.011.16310168
CCTGGCC135350.010.91167929
TCCTGCG145700.010.47424765
GCCACGA290900.09.96278666
ACGAGTT302950.09.65859169
ACGCGGC166000.09.40195410
CGCCAGC165200.09.3216672
GGCCACG310500.09.19865765
GCAACGC170550.09.1307847
Produced by FastQC (version 0.11.2)