FastQCFastQC Report
Wed 9 Mar 2016
HN3L7BGXX_n01_lbd38-gr_06.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHN3L7BGXX_n01_lbd38-gr_06.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8241736
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGCCT24250.014.863358512
CCTGCGT25450.014.44077466
ACGCCAG26100.014.3525731
TGCGTTA27100.013.9484268
GCGTTAT25950.013.75747169
CGCGGCC26750.013.60507811
CGGCCTT28750.013.38902413
CCTGGCC28350.013.20883129
GCTGGCC28000.013.1265140
TCCTGGC28200.013.03064528
AACGCGG27400.013.0272169
GCAAGGG24200.012.5807328
CGGGGGA7600.011.9769511
CGCCAGC31850.011.8678392
TCCTGCG31650.011.50134465
CACGAGT56250.010.95117468
TTACGGT35250.010.9205921
TTTACGG35200.010.83668320
ACGCGGC33700.010.69544410
GGGCGGT7900.010.6358121
Produced by FastQC (version 0.11.2)