FastQCFastQC Report
Thu 17 Aug 2017
HN3C3AFXX_n01_ah9003mnase0h-0817.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHN3C3AFXX_n01_ah9003mnase0h-0817.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7572847
Sequences flagged as poor quality0
Sequence length50
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCCCG6600.018.3323978
GCCCCGC7950.016.0492849
TCCGGCC12600.015.7218921
CGGTCCG7400.014.8697023
CCGGCCC11750.014.7972812
GCCCGCC12450.014.1411485
CGGGGCG9550.013.82110116
TCCGGTC8050.013.6712111
GCGGGGC10100.013.06846815
GTGCGGG7950.013.005712539
CCGCCCC22200.012.6840377
CGGCCCG13400.012.6459053
GGCCCGC13900.012.5076674
GGTCCGC9050.012.4018254
ACCCCCG6700.012.14855327
GGGGGCG8800.011.99922919
CCGCGGG12500.011.96723113
CGCCCCC13700.011.8826068
CGCGGGG12650.011.82532714
CGGAGGG7550.011.65488115
Produced by FastQC (version 0.11.2)