HN2WTAFXX_n02_c1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HN2WTAFXX_n02_c1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3199691
Sequences flagged as poor quality	0
Sequence length	75
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCATATCTAAGTATAAGCAATTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAG	9751	0.3047481772458653	No Hit
GCTTAATCTTTGAGACAAGCATATGACTACTGGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGT	7869	0.24592999761539475	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5786	0.18082996139314703	No Hit
CAGTTATACCATGTAGTAAAGGAACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA	5615	0.17548569533745603	No Hit
CTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCC	4986	0.1558275470975166	No Hit
GTGTCTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAGACCTT	4203	0.13135643410566833	No Hit
ATCTACTATCTAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGC	3887	0.12148048045889431	No Hit
CAAAATGACATTGCAATTCGCCAGCAAGCACCCAAGGCCTTTCCGCCAAGTGCACCGTTGCTAGCCTGCTATGGT	3595	0.1123545992409892	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTGA	330	0.0	61.67946	7
GCGGGTG	395	0.0	52.404694	6
AGCGGGT	420	0.0	51.748833	5
ATATCTA	1730	0.0	47.26415	3
CATATCT	1765	0.0	46.522373	2
GCATATC	1775	0.0	46.459003	1
ATCTAAG	1765	0.0	46.32473	5
TGACTAC	1660	0.0	45.71114	24
TACTGGC	1700	0.0	43.825397	28
CAGGGTG	245	0.0	43.65139	7
ATGACTA	1760	0.0	42.722633	23
GCATATG	1775	0.0	42.5639	19
TGGGGCA	425	0.0	41.39712	14
GGGCAAA	440	0.0	39.986477	16
CTGTCCG	35	0.0013483282	39.427677	5
TCGGAGT	80	1.6425474E-9	38.813442	4
CATATGA	2000	0.0	37.94677	20
GACAAGC	2045	0.0	37.44972	14
ATATGAC	2065	0.0	36.747723	21
GAGACAA	2105	0.0	36.376583	12