FastQCFastQC Report
Mon 22 Jan 2024
HN2GGAFX5_n01_DAM-GR_bZIP1-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHN2GGAFX5_n01_DAM-GR_bZIP1-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24298915
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATGGGGGTT706470.29074137672402245TruSeq Adapter, Index 4 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATGGCGGAT575880.23699823634100534TruSeq Adapter, Index 4 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATGGGGGAT537270.2211086379782801TruSeq Adapter, Index 4 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATGGGGGGT425900.1752753157908491TruSeq Adapter, Index 4 (97% over 38bp)
GGTCGCGGCCGAGGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATA373580.15374349019287487No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATGGCGGTT347420.14297757739388775TruSeq Adapter, Index 4 (97% over 38bp)
GGTCGCGGCCGAGGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATA310890.12794398433016455No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATGGCGTAT304440.12528954482123997TruSeq Adapter, Index 4 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATCGCGGAT286240.11779949845497216TruSeq Adapter, Index 4 (97% over 38bp)
GGTCGCGGCCGAGGATCCGCCTAGGCTGTCCCGAGTGTGAGCGAGGTGTG285210.1173756112155625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)