FastQCFastQC Report
Mon 22 Jan 2024
HN2GGAFX5_n01_DAM-GR-NLP7-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHN2GGAFX5_n01_DAM-GR-NLP7-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21647122
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCAGTCAATCTCGTAT907130.41905339656698937TruSeq Adapter, Index 18 (97% over 38bp)
TCCTCGGCCGCGACCACGCTGCCCTATAGTGAGTCGTATTAGAGATCGGA257590.11899503315036522Clontech Universal Primer Mix Long (100% over 23bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCAGTCAATCGCGTAT236270.10914614885064167TruSeq Adapter, Index 18 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)